Histone_ChIP-seq_ENCSR500GXT
Histone_ChIP-seq ENCSR500GXT [biosample_summary="Homo sapiens lung tissue male child (3 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR500GXT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR500GXT [biosamplesummary="Homo sapiens lung tissue male child (3 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN318MMV|/analyses/ENCAN318MMV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN318MMV|/analyses/ENCAN318MMV/} has in progress subobject document {1735b70e-c77d-4c5d-9fd3-da495a022036|/documents/1735b70e-c77d-4c5d-9fd3-da495a022036/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF054JXD|/files/ENCFF054JXD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF054JXD|/files/ENCFF054JXD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR500GXT | float |
Histone_ChIP-seq_ENCSR500GXT |
Histone_ChIP-seq ENCSR500GXT [biosample_summary="Homo sapiens lung tissue male child (3 years)" and target="H3K4me3"]
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[1.67, 66] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF526QUJ.bed.gz | 736.44 KB | 1ceb900e51b9361b86dd20b648c034b1 |
| ENCFF526QUJ.bed.gz.dvc | 100.0 B | 614924a4a41e0422503b17ee33fc6c5b |
| ENCFF526QUJ.tabix.bed.gz | 312.27 KB | 6c2010f27ae7d7655ea47344f7725911 |
| ENCFF526QUJ.tabix.bed.gz.dvc | 106.0 B | 6d148c559b0574b20814b9ad24a8d5a8 |
| ENCFF526QUJ.tabix.bed.gz.tbi | 157.94 KB | 330d41c5caefdfd9a746fac5d945e665 |
| ENCFF526QUJ.tabix.bed.gz.tbi.dvc | 110.0 B | 4a27a1bb184ecfcd4708b7acd35e22ef |
| genomic_resource.yaml | 3.14 KB | 6afbf7bcaae61468c2d4eac0f56238f1 |
| genomic_resource_original.yaml | 3.01 KB | a42b9baf944ce9624c5d6618ba8213e4 |
| statistics/ |