Resource
| Id | Histone_ChIP-seq/ENCSR499CAZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR499CAZ [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K14ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN655CND|/analyses/ENCAN655CND/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN655CND|/analyses/ENCAN655CND/} has in progress subobject document {9dca6aa1-bc90-43bb-9fc0-71c91ef0f245|/documents/9dca6aa1-bc90-43bb-9fc0-71c91ef0f245/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF381CWR|/files/ENCFF381CWR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF381CWR|/files/ENCFF381CWR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.94. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR499CAZ | float |
Histone_ChIP-seq_ENCSR499CAZ |
Histone_ChIP-seq ENCSR499CAZ [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K14ac"]
|
 |
[1.6, 22.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27603261 | 0.86% | 77340 |
| chr1 | 2984991 | 1.20% | 8313 |
| chr2 | 2075752 | 0.86% | 6006 |
| chr3 | 1505371 | 0.76% | 4393 |
| chr4 | 935259 | 0.49% | 2802 |
| chr5 | 1439115 | 0.79% | 4119 |
| chr6 | 1329651 | 0.78% | 3957 |
| chr7 | 1206884 | 0.76% | 3475 |
| chr8 | 1201757 | 0.83% | 3501 |
| chr9 | 1306646 | 0.94% | 3584 |
| chr10 | 1470037 | 1.10% | 4124 |
| chr11 | 1566588 | 1.16% | 4299 |
| chr12 | 1355477 | 1.02% | 3738 |
| chr13 | 608420 | 0.53% | 1838 |
| chr14 | 977644 | 0.91% | 2727 |
| chr15 | 953344 | 0.93% | 2607 |
| chr16 | 1044232 | 1.16% | 2741 |
| chr17 | 1538104 | 1.85% | 4051 |
| chr18 | 491047 | 0.61% | 1464 |
| chr19 | 1312759 | 2.24% | 3266 |
| chr20 | 838007 | 1.30% | 2252 |
| chr21 | 282897 | 0.61% | 776 |
| chr22 | 705499 | 1.39% | 1899 |
| chrX | 450309 | 0.29% | 1340 |
| chrY | 23471 | 0.04% | 68 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 77340 | 138 | 4581 | 356.91 | 280 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF570YFB.bed.gz | 1.68 MB | 3a45438e09a2e481df783c69d8cae7e8 |
| ENCFF570YFB.tabix.bed.gz | 798.21 KB | a724a29a111dd9f1d6a16a76459e0cc0 |
| ENCFF570YFB.tabix.bed.gz.tbi | 230.5 KB | c6ac43e189cbb71d7811dd117ab0fc3e |
| genomic_resource.yaml | 2.96 KB | cd0a22fd76415a9136a55ad0cde690b1 |
| statistics/ |