Histone_ChIP-seq_ENCSR499CAZ
Histone_ChIP-seq ENCSR499CAZ [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K14ac"]
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| Id: | Histone_ChIP-seq/ENCSR499CAZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR499CAZ [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H3K14ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN655CND|/analyses/ENCAN655CND/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN655CND|/analyses/ENCAN655CND/} has in progress subobject document {9dca6aa1-bc90-43bb-9fc0-71c91ef0f245|/documents/9dca6aa1-bc90-43bb-9fc0-71c91ef0f245/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF381CWR|/files/ENCFF381CWR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF381CWR|/files/ENCFF381CWR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR499CAZ | float |
Histone_ChIP-seq_ENCSR499CAZ |
Histone_ChIP-seq ENCSR499CAZ [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K14ac"]
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[1.6, 22.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF570YFB.bed.gz | 1.68 MB | 3a45438e09a2e481df783c69d8cae7e8 |
| ENCFF570YFB.bed.gz.dvc | 101.0 B | 02fb77b38d7397fbf42d440bb3619f20 |
| ENCFF570YFB.tabix.bed.gz | 798.21 KB | a724a29a111dd9f1d6a16a76459e0cc0 |
| ENCFF570YFB.tabix.bed.gz.dvc | 106.0 B | 4d59cc9909cd6e12198e360d03a2fbfc |
| ENCFF570YFB.tabix.bed.gz.tbi | 230.5 KB | c6ac43e189cbb71d7811dd117ab0fc3e |
| ENCFF570YFB.tabix.bed.gz.tbi.dvc | 110.0 B | 7df3eb96d4944fb16caa45feb8598b14 |
| genomic_resource.yaml | 2.96 KB | cd0a22fd76415a9136a55ad0cde690b1 |
| genomic_resource_original.yaml | 2.83 KB | 8df675c4e5289bf8a852762a7a1266b1 |
| statistics/ |