Histone_ChIP-seq_ENCSR498LHL
Histone_ChIP-seq ENCSR498LHL [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K4me1"]
×
| Id: | Histone_ChIP-seq/ENCSR498LHL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR498LHL [biosamplesummary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN641FJT|/analyses/ENCAN641FJT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF025OTC|/files/ENCFF025OTC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 38189187 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF025OTC|/files/ENCFF025OTC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF025OTC|/files/ENCFF025OTC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.85. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR498LHL | float |
Histone_ChIP-seq_ENCSR498LHL |
Histone_ChIP-seq ENCSR498LHL [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K4me1"]
|
|
[1.82, 12.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF951XHW.bed.gz | 1.48 MB | 15d26fc3371868ab33e7c947c1d55a06 |
| ENCFF951XHW.bed.gz.dvc | 101.0 B | 922559baea81e62749cf4c8ed49b5f78 |
| ENCFF951XHW.tabix.bed.gz | 786.31 KB | 13f08bceb99cd102b396386d9ea08c6b |
| ENCFF951XHW.tabix.bed.gz.dvc | 106.0 B | f51155c97eb34d32c647ef1ac5de252c |
| ENCFF951XHW.tabix.bed.gz.tbi | 256.23 KB | a7a78a6ef2e870455f53a7d0ea242573 |
| ENCFF951XHW.tabix.bed.gz.tbi.dvc | 110.0 B | 79ce0e56d6450106e2b5131f298460c8 |
| genomic_resource.yaml | 3.3 KB | 6ccd659ed20444c8177311754f52397a |
| genomic_resource_original.yaml | 3.15 KB | 9097e174e4018876caf81c87c90e30b8 |
| statistics/ |