Resource
| Id | Histone_ChIP-seq/ENCSR497UIB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR497UIB [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (50 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 2 summary: female adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN137IUN|/analyses/ENCAN137IUN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF553DUQ|/files/ENCFF553DUQ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 28771713 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR497UIB | float |
Histone_ChIP-seq_ENCSR497UIB |
Histone_ChIP-seq ENCSR497UIB [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (50 years)" and target="H3K36me3"]
|
 |
[1.77, 24.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 96225177 | 2.99% | 148687 |
| chr1 | 9694740 | 3.89% | 14451 |
| chr2 | 7237037 | 2.99% | 11751 |
| chr3 | 5982441 | 3.02% | 9506 |
| chr4 | 3734061 | 1.96% | 6273 |
| chr5 | 4767276 | 2.63% | 7660 |
| chr6 | 4318941 | 2.53% | 6868 |
| chr7 | 4181068 | 2.62% | 6818 |
| chr8 | 3075741 | 2.12% | 5091 |
| chr9 | 4257760 | 3.08% | 6394 |
| chr10 | 4252415 | 3.18% | 6827 |
| chr11 | 5050897 | 3.74% | 7373 |
| chr12 | 5379848 | 4.04% | 7956 |
| chr13 | 1815211 | 1.59% | 3124 |
| chr14 | 3478436 | 3.25% | 5355 |
| chr15 | 3792404 | 3.72% | 5835 |
| chr16 | 4434127 | 4.91% | 6452 |
| chr17 | 5668282 | 6.81% | 8286 |
| chr18 | 1564835 | 1.95% | 2638 |
| chr19 | 5330058 | 9.09% | 7773 |
| chr20 | 3143562 | 4.88% | 4470 |
| chr21 | 1198231 | 2.57% | 1811 |
| chr22 | 2672718 | 5.26% | 3669 |
| chrX | 1195088 | 0.77% | 2306 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 148687 | 145 | 15007 | 647.17 | 469 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF584OSE.bed.gz | 2.8 MB | 7fac8c905621f824102cb5ef77829c04 |
| ENCFF584OSE.tabix.bed.gz | 1.39 MB | 126b5aa9a800d0738b2a02787076f524 |
| ENCFF584OSE.tabix.bed.gz.tbi | 181.24 KB | 749f4d332ada6fe7e4c662fd31950e05 |
| genomic_resource.yaml | 2.03 KB | 7a64c1ae2c25e93b307ec49d20d9b236 |
| statistics/ |