Resource

Id Histone_ChIP-seq/ENCSR497OVDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR497OVD [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR497OVD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue female adult (51 years)
  • date_created: 2017-12-06T20:58:06.691822+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR497OVD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR497OVD float

Histone_ChIP-seq_ENCSR497OVD
Histone_ChIP-seq ENCSR497OVD [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR497OVD [1.48, 8.1]
n
107,795,559
mean
3.27
sd
0.814

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1077955593.35% 88967
chr1 10159547 4.08% 8250
chr1_KI270712v1_random 497 0.28% 1
chr2 8617844 3.56% 7220
chr3 7495879 3.78% 6272
chr4 5042620 2.65% 4329
chr5 5566042 3.07% 4726
chr6 6354267 3.72% 5344
chr7 4790061 3.01% 4089
chr8 5047978 3.48% 4224
chr9 5176733 3.74% 4249
chr10 5916303 4.42% 4745
chr11 5903905 4.37% 4719
chr12 5052672 3.79% 4159
chr13 2584644 2.26% 2193
chr14 3829514 3.58% 3097
chr15 3889582 3.81% 3138
chr16 3850157 4.26% 3161
chr17 5103323 6.13% 4021
chr18 2404784 2.99% 1962
chr19 3409423 5.82% 2867
chr20 3116910 4.84% 2457
chr21 1108461 2.37% 953
chr22 2628732 5.17% 1983
chrUn_GL000219v1 952 0.53% 1
chrX 744729 0.48% 807
3341 contigs with no values (185949259 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 88967 300 26370 1211.64 956
global segment-length histogram

Files

Filename Size md5
ENCFF269PAP.bed.gz 2.02 MB a04b3225926c472e08990083d44aee26
ENCFF269PAP.tabix.bed.gz 959.39 KB 2579bf3c1ca64cbb1420c3986d336188
ENCFF269PAP.tabix.bed.gz.tbi 281.37 KB 73308d54f0d8d5c6099b931a3a6dce24
genomic_resource.yaml 1.51 KB 6fa2eeb4caff64b14bb7ecd08e454bf5
statistics/