Resource

Id Histone_ChIP-seq/ENCSR495OEGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR495OEG [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR495OEG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000088/
  • biosample_summary: Homo sapiens trophoblast tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:17:02.432783+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR495OEG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR495OEG float

Histone_ChIP-seq_ENCSR495OEG
Histone_ChIP-seq ENCSR495OEG [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR495OEG [1.39, 15.8]
n
28,929,730
mean
4.33
sd
0.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 289297300.90% 39281
chr1 2180701 0.88% 2912
chr2 1016791 0.42% 1534
chr3 702829 0.35% 1047
chr4 357295 0.19% 521
chr5 925319 0.51% 1318
chr5_GL000208v1_random 274 0.30% 1
chr6 891628 0.52% 1180
chr7 725674 0.46% 1044
chr8 766291 0.53% 1143
chr9 495406 0.36% 686
chr9_KI270720v1_random 965 2.47% 1
chr10 1179307 0.88% 1667
chr11 1151741 0.85% 1614
chr12 1100441 0.83% 1502
chr13 472896 0.41% 635
chr14 601791 0.56% 872
chr14_GL000225v1_random 1722 0.82% 4
chr14_KI270722v1_random 1052 0.54% 2
chr14_KI270724v1_random 967 2.44% 1
chr15 595280 0.58% 899
chr16 1077541 1.19% 1518
chr17 711718 0.85% 999
chr17_GL000205v2_random 38536 20.76% 9
chr18 406504 0.51% 602
chr19 853594 1.46% 1165
chr20 939261 1.46% 1302
chr21 290711 0.62% 397
chr22 380047 0.75% 521
chr22_KI270732v1_random 507 1.22% 1
chr22_KI270733v1_random 838 0.47% 1
chr22_KI270735v1_random 1541 3.60% 2
chrUn_GL000216v2 522 0.30% 2
chrUn_GL000219v1 10321 5.76% 3
chrUn_GL000224v1 7408 4.12% 7
chrUn_KI270438v1 2375 2.11% 4
chrUn_KI270442v1 1203 0.31% 3
chrUn_KI270511v1 597 7.35% 1
chrUn_KI270515v1 534 8.39% 1
chrUn_KI270519v1 1479 1.07% 3
chrUn_KI270538v1 2836 3.11% 5
chrUn_KI270742v1 517 0.28% 1
chrUn_KI270744v1 2163 1.28% 2
chrUn_KI270746v1 2639 3.97% 4
chrUn_KI270751v1 1576 1.05% 2
chrUn_KI270756v1 423 0.53% 1
chrX 11023124 7.06% 14136
chrY 2845 <0.01% 6
3319 contigs with no values (126114834 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39281 235 20406 736.48 617
global segment-length histogram

Files

Filename Size md5
ENCFF740AIH.bed.gz 702.66 KB 48bfa107cf1a26a97fa252bf169af257
ENCFF740AIH.tabix.bed.gz 363.0 KB 9d67cfbd055526314273ca0fff5d2437
ENCFF740AIH.tabix.bed.gz.tbi 131.83 KB 90024d9fcba4bec1dc741320720220a6
genomic_resource.yaml 2.01 KB 1a5fc2608d385c0e31a8a6cb60b2bade
statistics/