Histone_ChIP-seq_ENCSR494QLL
Histone_ChIP-seq ENCSR494QLL [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR494QLL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR494QLL [biosamplesummary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN875JOR|/analyses/ENCAN875JOR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF302LAI|/files/ENCFF302LAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF302LAI|/files/ENCFF302LAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.14. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR494QLL | float |
Histone_ChIP-seq_ENCSR494QLL |
Histone_ChIP-seq ENCSR494QLL [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="H3K4me3"]
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[1.75, 79] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF974XHZ.bed.gz | 827.17 KB | 3a126f2fc665d40b60d15993112631bc |
| ENCFF974XHZ.bed.gz.dvc | 100.0 B | f16a28598558cf0cbc7ef5dc968f8add |
| ENCFF974XHZ.tabix.bed.gz | 357.89 KB | 535f73e00646508368951318e782571a |
| ENCFF974XHZ.tabix.bed.gz.dvc | 106.0 B | 348e9fdf8de3aed660388118fd4dda6e |
| ENCFF974XHZ.tabix.bed.gz.tbi | 183.2 KB | eb541b30ebc802eba0595b410d8f8546 |
| ENCFF974XHZ.tabix.bed.gz.tbi.dvc | 110.0 B | 947ba909e2dc85a5ca57cee3b3203a21 |
| genomic_resource.yaml | 2.81 KB | 68803252662d326c50206065813074cc |
| genomic_resource_original.yaml | 2.66 KB | b32f09ed761c82ee963d6303671e7eff |
| statistics/ |