Histone_ChIP-seq_ENCSR493FIV
Histone_ChIP-seq ENCSR493FIV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR493FIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR493FIV [biosamplesummary="Homo sapiens smooth muscle cell originated from H9" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN466MYD|/analyses/ENCAN466MYD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF518AQW|/files/ENCFF518AQW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 35941089 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF033JLQ|/files/ENCFF033JLQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 41356901 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF033JLQ|/files/ENCFF033JLQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF033JLQ|/files/ENCFF033JLQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR493FIV | float |
Histone_ChIP-seq_ENCSR493FIV |
Histone_ChIP-seq ENCSR493FIV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K79me2"]
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[1.28, 14] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF304JWR.bed.gz | 2.02 MB | 552c233385db535205178899a5ed3dba |
| ENCFF304JWR.bed.gz.dvc | 101.0 B | 80a46357d2e22df7565714f3ae05a932 |
| ENCFF304JWR.tabix.bed.gz | 955.78 KB | 7f05bd83446d92bf9c98dc40c7b13a37 |
| ENCFF304JWR.tabix.bed.gz.dvc | 106.0 B | 0a9beb2c8282296657d053349049a3c0 |
| ENCFF304JWR.tabix.bed.gz.tbi | 140.88 KB | 993b840fc2dedcc4a42b9ed7f567b20d |
| ENCFF304JWR.tabix.bed.gz.tbi.dvc | 110.0 B | b6012e7cb4d4cbd15ecbdbba311038b6 |
| genomic_resource.yaml | 3.72 KB | 847935308538bc6d7912db91e02d9004 |
| genomic_resource_original.yaml | 3.58 KB | db3dbad5eebd4a42bd7a3be128bacfbb |
| statistics/ |