Resource

Id Histone_ChIP-seq/ENCSR492BHNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR492BHN [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR492BHN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (51 years)
  • date_created: 2019-01-28T12:25:50.984961+00:00
  • date_released: 2019-02-11
  • doi: 10.17989/ENCSR492BHN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR492BHN float

Histone_ChIP-seq_ENCSR492BHN
Histone_ChIP-seq ENCSR492BHN [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR492BHN [1.47, 59.5]
n
42,926,671
mean
28.2
sd
14.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 429266711.33% 25171
chr1 4275911 1.72% 2495
chr2 2895959 1.20% 1655
chr3 2409164 1.21% 1376
chr4 1743936 0.92% 1001
chr5 1995924 1.10% 1120
chr6 2384740 1.40% 1355
chr7 2121978 1.33% 1276
chr8 1596081 1.10% 955
chr9 1810087 1.31% 1064
chr10 1816642 1.36% 1093
chr11 2362295 1.75% 1306
chr12 2224297 1.67% 1286
chr13 870785 0.76% 528
chr14 1397961 1.31% 799
chr15 1409944 1.38% 831
chr16 1712032 1.90% 1041
chr17 2543787 3.06% 1472
chr18 715054 0.89% 425
chr19 2776304 4.74% 1736
chr20 1129121 1.75% 675
chr21 447651 0.96% 277
chr22 997265 1.96% 611
chrX 1288909 0.83% 793
chrY 844 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25171 230 19162 1705.4 1512
global segment-length histogram

Files

Filename Size md5
ENCFF261CHY.bed.gz 672.0 KB d1883176bfddb29cb3b50ba696ca0068
ENCFF261CHY.tabix.bed.gz 290.4 KB 6af502e05a4ea40f640fe311b5471018
ENCFF261CHY.tabix.bed.gz.tbi 162.55 KB f18c03527151537aba44350a0cc0d0d4
genomic_resource.yaml 1.5 KB 01d2c1a18bda3c9b436af779f4b6a418
statistics/