Resource

Id Histone_ChIP-seq/ENCSR491WAPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR491WAP [biosample_summary="Homo sapiens PC-9" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR491WAP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-10-24T16:28:02.434020+00:00
  • date_released: 2017-01-23
  • doi: 10.17989/ENCSR491WAP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR491WAP float

Histone_ChIP-seq_ENCSR491WAP
Histone_ChIP-seq ENCSR491WAP [biosample_summary="Homo sapiens PC-9" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR491WAP [1.51, 20.3]
n
45,085,678
mean
5.06
sd
2.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 450856781.40% 63752
chr1 4708458 1.89% 6737
chr2 3885241 1.60% 5538
chr3 4055568 2.05% 6058
chr4 1858274 0.98% 2626
chr5 2905094 1.60% 4395
chr6 3591350 2.10% 5130
chr7 2980744 1.87% 4535
chr8 1655905 1.14% 2395
chr9 1424280 1.03% 1909
chr10 1414793 1.06% 1864
chr11 2227879 1.65% 3088
chr12 2593491 1.95% 3735
chr13 1524849 1.33% 2424
chr14 1182982 1.11% 1498
chr15 948146 0.93% 1173
chr16 1089243 1.21% 1354
chr17 1576490 1.89% 1978
chr18 1124988 1.40% 1741
chr19 1557333 2.66% 1875
chr20 852594 1.32% 1110
chr21 274160 0.59% 381
chr22 571997 1.13% 722
chrX 1081819 0.69% 1486
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63752 205 5345 707.2 549
global segment-length histogram

Files

Filename Size md5
ENCFF869QQV.bed.gz 1.58 MB ef182529f3e607f9e351e3b545765262
ENCFF869QQV.tabix.bed.gz 693.82 KB 4783dd07a81a89aa2744abf0e77baa56
ENCFF869QQV.tabix.bed.gz.tbi 308.25 KB b083d5f2e3618c8328d1bb177c361ae1
genomic_resource.yaml 1.36 KB bb4b02aff3e37cb17506619e2cf388c1
statistics/