Resource

Id Histone_ChIP-seq/ENCSR489RQVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR489RQV [biosample_summary="Homo sapiens liver tissue male adult (78 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR489RQV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002107/
  • biosample_summary: Homo sapiens liver tissue male adult (78 years)
  • date_created: 2015-09-15T19:52:17.162687+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR489RQV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR489RQV float

Histone_ChIP-seq_ENCSR489RQV
Histone_ChIP-seq ENCSR489RQV [biosample_summary="Homo sapiens liver tissue male adult (78 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR489RQV [2.04, 18.3]
n
20,556,934
mean
5.8
sd
2.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 205569340.64% 36477
chr1 1212388 0.49% 2247
chr1_KI270709v1_random 3009 4.50% 4
chr2 1304119 0.54% 2578
chr2_KI270716v1_random 4274 2.78% 8
chr3 987622 0.50% 1945
chr4 1113529 0.59% 2154
chr4_GL000008v2_random 4363 2.08% 1
chr5 1517220 0.84% 2660
chr6 909725 0.53% 1777
chr7 1297512 0.81% 2421
chr8 970344 0.67% 1869
chr9 737125 0.53% 1318
chr10 982895 0.73% 1820
chr11 811841 0.60% 1540
chr12 1011754 0.76% 1786
chr13 475988 0.42% 982
chr14 429995 0.40% 895
chr14_GL000225v1_random 3376 1.60% 9
chr14_KI270722v1_random 2048 1.06% 6
chr15 498698 0.49% 900
chr16 637310 0.71% 1132
chr17 401182 0.48% 708
chr17_GL000205v2_random 1015 0.55% 3
chr17_KI270729v1_random 34528 12.29% 51
chr17_KI270730v1_random 7525 6.69% 12
chr18 382523 0.48% 765
chr19 3659003 6.24% 4771
chr20 406103 0.63% 743
chr21 271231 0.58% 467
chr22 157058 0.31% 315
chr22_KI270735v1_random 826 1.93% 1
chr22_KI270736v1_random 18696 10.28% 28
chr22_KI270738v1_random 4400 4.43% 10
chrUn_GL000216v2 25690 14.55% 40
chrUn_GL000219v1 418 0.23% 1
chrUn_GL000224v1 6081 3.38% 11
chrUn_KI270429v1 416 30.57% 1
chrUn_KI270435v1 324 0.35% 1
chrUn_KI270438v1 6790 6.04% 13
chrUn_KI270442v1 51676 13.18% 62
chrUn_KI270465v1 365 20.57% 1
chrUn_KI270466v1 500 40.55% 1
chrUn_KI270467v1 1556 39.69% 1
chrUn_KI270468v1 787 19.41% 1
chrUn_KI270512v1 696 3.07% 1
chrUn_KI270517v1 697 21.43% 2
chrUn_KI270519v1 1623 1.18% 3
chrUn_KI270538v1 357 0.39% 1
chrUn_KI270589v1 1543 3.47% 2
chrUn_KI270591v1 632 10.90% 2
chrUn_KI270744v1 338 0.20% 1
chrUn_KI270746v1 239 0.36% 1
chrUn_KI270747v1 436 0.22% 1
chrUn_KI270750v1 234 0.16% 1
chrUn_KI270751v1 413 0.27% 1
chrUn_KI270754v1 191 0.48% 1
chrUn_KI270756v1 322 0.40% 1
chrUn_KI270757v1 2219 3.11% 5
chrX 122862 0.08% 258
chrY 70304 0.12% 137
3306 contigs with no values (124963052 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36477 125 17018 563.56 446
global segment-length histogram

Files

Filename Size md5
ENCFF238DFW.bed.gz 674.57 KB 36ad97ed26b3de442e451ac333e30866
ENCFF238DFW.tabix.bed.gz 349.22 KB c7e4dcf5e43f040850eb9397b7a97f56
ENCFF238DFW.tabix.bed.gz.tbi 176.16 KB 5e7e1e3a8b94dfe163570cc678bbca3c
genomic_resource.yaml 1.98 KB 653dc0f05977ffe4301332fedfe8efdd
statistics/