Resource

Id Histone_ChIP-seq/ENCSR488YXScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR488YXS [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR488YXS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue female adult (51 years)
  • date_created: 2018-11-07T17:35:51.202624+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR488YXS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR488YXS float

Histone_ChIP-seq_ENCSR488YXS
Histone_ChIP-seq ENCSR488YXS [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR488YXS [1.28, 4.27]
n
1,131,944
mean
2.73
sd
0.385

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 11319440.04% 2377
chr1 100322 0.04% 216
chr2 48283 0.02% 116
chr3 59683 0.03% 138
chr4 32550 0.02% 71
chr5 47323 0.03% 109
chr6 39313 0.02% 94
chr7 44812 0.03% 94
chr8 27036 0.02% 57
chr9 47130 0.03% 101
chr10 33038 0.02% 73
chr11 48791 0.04% 110
chr12 77057 0.06% 153
chr13 7841 0.01% 19
chr14 36793 0.03% 76
chr15 33436 0.03% 75
chr16 57213 0.06% 119
chr17 69798 0.08% 152
chr18 12194 0.02% 29
chr19 203990 0.35% 339
chr20 40354 0.06% 94
chr21 12728 0.03% 31
chr22 44238 0.09% 91
chrX 8021 0.01% 20
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2377 170 2418 476.21 410
global segment-length histogram

Files

Filename Size md5
ENCFF382XMT.bed.gz 47.86 KB 82fca100ec5c40b66dffd6c3e6a6d65f
ENCFF382XMT.tabix.bed.gz 25.42 KB f3ebd0d0c1cc4ace229d05268a3953c5
ENCFF382XMT.tabix.bed.gz.tbi 24.51 KB 38602f7980c000ac6eb0ac7f0b8ecd95
genomic_resource.yaml 1.74 KB e012734b708ea702e96d9673c9dd5bbc
statistics/