Histone_ChIP-seq_ENCSR486NDF
Histone_ChIP-seq ENCSR486NDF [biosample_summary="Homo sapiens pancreas tissue female adult (30 years)" and target="H3K27me3"]
×
| Id: | Histone_ChIP-seq/ENCSR486NDF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR486NDF [biosamplesummary="Homo sapiens pancreas tissue female adult (30 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (30 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN890WGO|/analyses/ENCAN890WGO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN890WGO|/analyses/ENCAN890WGO/} has in progress subobject document {c16df680-abeb-4bba-94aa-4b11991b2782|/documents/c16df680-abeb-4bba-94aa-4b11991b2782/} audit_not_compliant: Processed alignments file {ENCFF155GUI|/files/ENCFF155GUI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 34583271 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF155GUI|/files/ENCFF155GUI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF155GUI|/files/ENCFF155GUI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.92. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR486NDF | float |
Histone_ChIP-seq_ENCSR486NDF |
Histone_ChIP-seq ENCSR486NDF [biosample_summary="Homo sapiens pancreas tissue female adult (30 years)" and target="H3K27me3"]
|
|
[1.96, 6.68] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF203NYA.bed.gz | 98.42 KB | b5fce99e44971c91633d5add78dacdd2 |
| ENCFF203NYA.bed.gz.dvc | 100.0 B | 6dc63f0d6fbc4a2fcfbe910eb1022c41 |
| ENCFF203NYA.tabix.bed.gz | 54.72 KB | f40c3735df9f56ba93678072157506e9 |
| ENCFF203NYA.tabix.bed.gz.dvc | 105.0 B | f99892a9ad93b68cedf8b5b7faf7caa6 |
| ENCFF203NYA.tabix.bed.gz.tbi | 54.27 KB | 786b535602302710575275eb6488ccf1 |
| ENCFF203NYA.tabix.bed.gz.tbi.dvc | 109.0 B | 7a2d2570977dbfa988bc8a56cfe4da5c |
| genomic_resource.yaml | 3.47 KB | 870fd982433d54702c709e836c02dc8a |
| genomic_resource_original.yaml | 3.33 KB | c531109d5322c7b4fb332b1c2c9c8ea0 |
| statistics/ |