Resource

Id Histone_ChIP-seq/ENCSR486GERcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR486GER [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR486GER
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (65 years)
  • date_created: 2017-11-16T20:14:29.581071+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR486GER
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (65 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR486GER float

Histone_ChIP-seq_ENCSR486GER
Histone_ChIP-seq ENCSR486GER [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR486GER [1.66, 9.95]
n
47,110,123
mean
3.97
sd
1.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 471101231.46% 66374
chr1 2080673 0.84% 3360
chr2 4757796 1.96% 6606
chr3 4131284 2.08% 5681
chr4 798483 0.42% 1404
chr5 3666337 2.02% 4877
chr6 3345705 1.96% 4795
chr7 2655555 1.67% 3686
chr8 2697387 1.86% 3778
chr9 1000384 0.72% 1614
chr10 3228015 2.41% 4245
chr11 1316387 0.97% 2055
chr12 3263441 2.45% 4397
chr13 414532 0.36% 753
chr14 2121711 1.98% 2766
chr14_GL000194v1_random 281 0.15% 1
chr14_GL000225v1_random 1227 0.58% 3
chr15 628780 0.62% 1090
chr16 1935988 2.14% 2704
chr17 2850891 3.42% 3752
chr17_GL000205v2_random 2185 1.18% 3
chr18 1341300 1.67% 1817
chr19 1765504 3.01% 2512
chr20 2021079 3.14% 2711
chr21 164740 0.35% 264
chr22 472040 0.93% 743
chrUn_GL000195v1 1682 0.92% 4
chrX 445108 0.29% 751
chrY 1628 <0.01% 2
3338 contigs with no values (128305956 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66374 205 12370 709.77 549
global segment-length histogram

Files

Filename Size md5
ENCFF600ROA.bed.gz 1.35 MB 196de459e1e47fd710d47b66f4e40dee
ENCFF600ROA.tabix.bed.gz 679.23 KB e6a49a030503bcf11177d5b171d3c231
ENCFF600ROA.tabix.bed.gz.tbi 219.0 KB aa458017108d478adde82dd04c48d1e3
genomic_resource.yaml 2.04 KB 16fc754a7953ccb6c08baa8f2a36dd67
statistics/