Histone_ChIP-seq_ENCSR485ZKB
Histone_ChIP-seq ENCSR485ZKB [biosample_summary="Homo sapiens UCSF-4" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR485ZKB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR485ZKB [biosamplesummary="Homo sapiens UCSF-4" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN873UHL|/analyses/ENCAN873UHL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF358EIU|/files/ENCFF358EIU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20733279 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF018OSY|/files/ENCFF018OSY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15013331 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF358EIU|/files/ENCFF358EIU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF358EIU|/files/ENCFF358EIU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR485ZKB | float |
Histone_ChIP-seq_ENCSR485ZKB |
Histone_ChIP-seq ENCSR485ZKB [biosample_summary="Homo sapiens UCSF-4" and target="H3K27me3"]
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[1.19, 38.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF906DAU.bed.gz | 1.18 MB | 9c3eb59a2f997ccca2624cc8d7bd6799 |
| ENCFF906DAU.bed.gz.dvc | 101.0 B | baa0d76a0be6033e91f76d89f7941d38 |
| ENCFF906DAU.tabix.bed.gz | 603.35 KB | 24382e5468b80728eb9dabec883dfc77 |
| ENCFF906DAU.tabix.bed.gz.dvc | 106.0 B | 4e8be2e847053412142826e64793be80 |
| ENCFF906DAU.tabix.bed.gz.tbi | 238.18 KB | 5a0921e4c0037023f23abeb08c3b26b6 |
| ENCFF906DAU.tabix.bed.gz.tbi.dvc | 110.0 B | 5057b95e597564351c43ca744c1fc764 |
| genomic_resource.yaml | 3.71 KB | b554bb8c4350b904450781de5f3eaa48 |
| genomic_resource_original.yaml | 3.6 KB | 0f761c612b9e960818f9af089c95022b |
| statistics/ |