Histone_ChIP-seq_ENCSR484MFB
Histone_ChIP-seq ENCSR484MFB [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR484MFB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR484MFB [biosamplesummary="Homo sapiens hepatocyte originated from H9" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN478EYC|/analyses/ENCAN478EYC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF101CWO|/files/ENCFF101CWO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27674739 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF521JBV|/files/ENCFF521JBV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21550265 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF521JBV|/files/ENCFF521JBV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF521JBV|/files/ENCFF521JBV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR484MFB | float |
Histone_ChIP-seq_ENCSR484MFB |
Histone_ChIP-seq ENCSR484MFB [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K9me2"]
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[1.46, 4.86] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF273GGC.bed.gz | 34.41 KB | e134a344512de1135ce9460e4a8046d2 |
| ENCFF273GGC.bed.gz.dvc | 99.0 B | 2d27c97515dfb9a1472598befd315d50 |
| ENCFF273GGC.tabix.bed.gz | 17.92 KB | ba6ea8035d911463d5a944d5429ac021 |
| ENCFF273GGC.tabix.bed.gz.dvc | 105.0 B | c1748074d0b1cb04b262e8c1c821cfcc |
| ENCFF273GGC.tabix.bed.gz.tbi | 22.23 KB | 385c3527f05692fd1d9a8c8de19dc74d |
| ENCFF273GGC.tabix.bed.gz.tbi.dvc | 109.0 B | 502ff0fae3cf45fd99696b41fab702bc |
| genomic_resource.yaml | 3.7 KB | 91d28fd8fff1d6abceea4cee562487b7 |
| genomic_resource_original.yaml | 3.57 KB | 08b2e004e7fbce28b24d4e15a2929fde |
| statistics/ |