Histone_ChIP-seq_ENCSR482XTC
Histone_ChIP-seq ENCSR482XTC [biosample_summary="Homo sapiens SJSA1" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR482XTC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR482XTC [biosamplesummary="Homo sapiens SJSA1" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN257NEN|/analyses/ENCAN257NEN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF757YBM|/files/ENCFF757YBM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF757YBM|/files/ENCFF757YBM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR482XTC | float |
Histone_ChIP-seq_ENCSR482XTC |
Histone_ChIP-seq ENCSR482XTC [biosample_summary="Homo sapiens SJSA1" and target="H3K9me3"]
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[1.15, 32] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF921OTR.bed.gz | 845.79 KB | d1675611254c69423a3e417e8f987456 |
| ENCFF921OTR.bed.gz.dvc | 100.0 B | 20c648babc4da8ec289d0f02a85d7a5d |
| ENCFF921OTR.tabix.bed.gz | 419.43 KB | 3693a9e84d6f261f98bc8cd99cb9f9db |
| ENCFF921OTR.tabix.bed.gz.dvc | 106.0 B | b6300dc5d1288426cfcb0b6c183b54e6 |
| ENCFF921OTR.tabix.bed.gz.tbi | 194.33 KB | 7ccd25997e445aa96032c594f3c10eb9 |
| ENCFF921OTR.tabix.bed.gz.tbi.dvc | 110.0 B | d759c27a51d11de3b82e17189fa8024e |
| genomic_resource.yaml | 2.68 KB | 57519ff5784235d60d2da89f22d2633e |
| genomic_resource_original.yaml | 2.57 KB | c9c443b19f49a9c02505efdd5d2418be |
| statistics/ |