Resource
| Id | Histone_ChIP-seq/ENCSR482KJD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR482KJD [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (40 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN532SWB|/analyses/ENCAN532SWB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF379BWJ|/files/ENCFF379BWJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24102935 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR482KJD | float |
Histone_ChIP-seq_ENCSR482KJD |
Histone_ChIP-seq ENCSR482KJD [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K36me3"]
|
 |
[1.42, 21.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 107081712 | 3.33% | 86402 |
| chr1 | 11056378 | 4.44% | 8405 |
| chr1_KI270711v1_random | 1702 | 4.03% | 2 |
| chr2 | 9051940 | 3.74% | 7583 |
| chr3 | 7407398 | 3.74% | 6149 |
| chr4 | 4860222 | 2.56% | 4362 |
| chr5 | 6028557 | 3.32% | 5042 |
| chr6 | 5405138 | 3.16% | 4713 |
| chr7 | 5089805 | 3.19% | 4356 |
| chr8 | 4034462 | 2.78% | 3417 |
| chr9 | 4936808 | 3.57% | 3714 |
| chr9_KI270720v1_random | 1143 | 2.93% | 1 |
| chr10 | 5164532 | 3.86% | 4174 |
| chr11 | 5289085 | 3.92% | 3974 |
| chr12 | 6059306 | 4.55% | 4775 |
| chr13 | 2488742 | 2.18% | 2260 |
| chr14 | 3961891 | 3.70% | 3213 |
| chr15 | 4552927 | 4.46% | 3629 |
| chr16 | 3566640 | 3.95% | 2673 |
| chr17 | 4918610 | 5.91% | 3614 |
| chr17_GL000205v2_random | 488 | 0.26% | 1 |
| chr18 | 1945406 | 2.42% | 1756 |
| chr19 | 3759178 | 6.41% | 2597 |
| chr20 | 3107997 | 4.82% | 2261 |
| chr21 | 1105330 | 2.37% | 958 |
| chr22 | 1672103 | 3.29% | 1236 |
| chrUn_GL000195v1 | 1813 | 0.99% | 3 |
| chrUn_GL000219v1 | 1094 | 0.61% | 2 |
| chrX | 1613017 | 1.03% | 1532 |
| 3338 contigs with no values (185675555 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86402 | 245 | 21413 | 1239.34 | 881 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF584XPR.bed.gz | 1.73 MB | 3e5a72fa0d393bd03cab07ab26def029 |
| ENCFF584XPR.tabix.bed.gz | 850.44 KB | 0523881a8b35ffc5668a709607f393fc |
| ENCFF584XPR.tabix.bed.gz.tbi | 152.58 KB | f686dc191817683d180f547e8f6648e0 |
| genomic_resource.yaml | 2.01 KB | d82b87b69e1d3f58848d71e3cb7a0362 |
| statistics/ |