Histone_ChIP-seq_ENCSR481YGZ
Histone_ChIP-seq ENCSR481YGZ [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR481YGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR481YGZ [biosamplesummary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN735APL|/analyses/ENCAN735APL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF102MOJ|/files/ENCFF102MOJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF102MOJ|/files/ENCFF102MOJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR481YGZ | float |
Histone_ChIP-seq_ENCSR481YGZ |
Histone_ChIP-seq ENCSR481YGZ [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
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[1.83, 95.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF499KTB.bed.gz | 946.84 KB | 9339130e12a34cdfde557e9386261d85 |
| ENCFF499KTB.bed.gz.dvc | 100.0 B | b510b22417c4ff8c5b86b0e40a8fbde5 |
| ENCFF499KTB.tabix.bed.gz | 435.82 KB | 356961045d9bcc9472d03ac78204b70c |
| ENCFF499KTB.tabix.bed.gz.dvc | 106.0 B | 85529232435c5c018a6c6366a6de1600 |
| ENCFF499KTB.tabix.bed.gz.tbi | 197.69 KB | 2687a920bf32dc7400603e9eb255d2ba |
| ENCFF499KTB.tabix.bed.gz.tbi.dvc | 110.0 B | 48fd1b959127e3afba4cae04ad4a030f |
| genomic_resource.yaml | 2.73 KB | f7e8d75ff85074134973448b13c02ac0 |
| genomic_resource_original.yaml | 2.6 KB | 9b3cac4028a3ec4fb3e58cd22357d5cb |
| statistics/ |