Resource
| Id | Histone_ChIP-seq/ENCSR481QER |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR481QER [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (40 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN212KKI|/analyses/ENCAN212KKI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF829GYQ|/files/ENCFF829GYQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26103404 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR481QER | float |
Histone_ChIP-seq_ENCSR481QER |
Histone_ChIP-seq ENCSR481QER [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K4me1"]
|
 |
[1.69, 54.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 81620231 | 2.54% | 108779 |
| chr1 | 8449698 | 3.39% | 10905 |
| chr1_KI270712v1_random | 3112 | 1.77% | 7 |
| chr1_KI270713v1_random | 1789 | 4.39% | 4 |
| chr1_KI270714v1_random | 517 | 1.24% | 2 |
| chr2 | 5787624 | 2.39% | 7989 |
| chr3 | 4678497 | 2.36% | 6521 |
| chr4 | 2787802 | 1.47% | 4139 |
| chr5 | 3775643 | 2.08% | 5278 |
| chr6 | 4078997 | 2.39% | 5897 |
| chr7 | 4037729 | 2.53% | 5636 |
| chr8 | 3243929 | 2.24% | 4421 |
| chr9 | 3891105 | 2.81% | 5061 |
| chr9_KI270719v1_random | 381 | 0.22% | 1 |
| chr10 | 3784586 | 2.83% | 5095 |
| chr11 | 4779103 | 3.54% | 5927 |
| chr12 | 3672634 | 2.76% | 5136 |
| chr13 | 1498712 | 1.31% | 2312 |
| chr14 | 2922091 | 2.73% | 3765 |
| chr14_GL000194v1_random | 460 | 0.24% | 2 |
| chr14_KI270725v1_random | 630 | 0.36% | 1 |
| chr15 | 2746521 | 2.69% | 3641 |
| chr16 | 3570140 | 3.95% | 4341 |
| chr16_KI270728v1_random | 1143 | 0.06% | 4 |
| chr17 | 4685538 | 5.63% | 5669 |
| chr17_GL000205v2_random | 10753 | 5.79% | 11 |
| chr17_KI270729v1_random | 1701 | 0.61% | 2 |
| chr18 | 1223082 | 1.52% | 1844 |
| chr19 | 5087148 | 8.68% | 6200 |
| chr20 | 2593548 | 4.02% | 3265 |
| chr21 | 942773 | 2.02% | 1313 |
| chr22 | 2410067 | 4.74% | 2715 |
| chr22_KI270732v1_random | 2072 | 4.99% | 1 |
| chr22_KI270733v1_random | 293 | 0.16% | 1 |
| chr22_KI270735v1_random | 1239 | 2.89% | 1 |
| chrUn_GL000195v1 | 1447 | 0.79% | 5 |
| chrUn_GL000214v1 | 255 | 0.19% | 1 |
| chrUn_GL000219v1 | 1829 | 1.02% | 3 |
| chrUn_KI270438v1 | 894 | 0.79% | 2 |
| chrUn_KI270749v1 | 2754 | 1.73% | 3 |
| chrX | 941995 | 0.60% | 1658 |
| 3326 contigs with no values (182130480 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108779 | 165 | 15863 | 750.33 | 583 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF749ZDA.bed.gz | 2.08 MB | 617e771c85720c6ecdfbcc2c86da2b0c |
| ENCFF749ZDA.tabix.bed.gz | 1.05 MB | d769aea60ae0cb580bd811031436c373 |
| ENCFF749ZDA.tabix.bed.gz.tbi | 293.24 KB | c20fdecec50cab954a174d70a3b19d43 |
| genomic_resource.yaml | 2.04 KB | 90a9a829cae57948eec4b2c6e58c1dfa |
| statistics/ |