Resource
| Id | Histone_ChIP-seq/ENCSR480WMC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR480WMC [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN243YJO|/analyses/ENCAN243YJO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF898KMX|/files/ENCFF898KMX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 33027567 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR480WMC | float |
Histone_ChIP-seq_ENCSR480WMC |
Histone_ChIP-seq ENCSR480WMC [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K4me1"]
|
 |
[1.31, 64.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 77506737 | 2.41% | 115565 |
| chr1 | 8166426 | 3.28% | 11853 |
| chr2 | 5626173 | 2.32% | 8836 |
| chr3 | 4205653 | 2.12% | 6720 |
| chr4 | 2262078 | 1.19% | 3787 |
| chr5 | 3352267 | 1.85% | 5334 |
| chr6 | 3635438 | 2.13% | 6035 |
| chr7 | 3469423 | 2.18% | 5422 |
| chr8 | 2894066 | 1.99% | 4542 |
| chr9 | 3743658 | 2.71% | 5315 |
| chr10 | 3756952 | 2.81% | 5611 |
| chr11 | 4630683 | 3.43% | 6441 |
| chr12 | 3535363 | 2.65% | 5382 |
| chr13 | 1264475 | 1.11% | 2239 |
| chr14 | 2746533 | 2.57% | 3942 |
| chr15 | 2803410 | 2.75% | 4215 |
| chr16 | 3645701 | 4.04% | 5046 |
| chr17 | 5099108 | 6.12% | 6788 |
| chr18 | 1120586 | 1.39% | 1937 |
| chr19 | 4796250 | 8.18% | 6193 |
| chr20 | 2573407 | 3.99% | 3830 |
| chr21 | 999374 | 2.14% | 1622 |
| chr22 | 2533356 | 4.99% | 3259 |
| chrX | 645236 | 0.41% | 1214 |
| chrY | 1121 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 115565 | 160 | 15324 | 670.68 | 516 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF030XCJ.bed.gz | 2.33 MB | 3d7a58d48a072d6fe05256fc2b40ea77 |
| ENCFF030XCJ.tabix.bed.gz | 1.13 MB | 50d80dea45ab80c706ba9c5f724a6eb4 |
| ENCFF030XCJ.tabix.bed.gz.tbi | 299.32 KB | 3eb66670a007fc4b9d087b0d457f77d4 |
| genomic_resource.yaml | 1.99 KB | 7c21bd5de76dd99f26d34547a5bbae02 |
| statistics/ |