Histone_ChIP-seq_ENCSR479HKJ
Histone_ChIP-seq ENCSR479HKJ [biosample_summary="Homo sapiens GM23248" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR479HKJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR479HKJ [biosamplesummary="Homo sapiens GM23248" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN782TUB|/analyses/ENCAN782TUB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN782TUB|/analyses/ENCAN782TUB/} has in progress subobject document {c41cdab8-1260-427d-acad-b3474d622e92|/documents/c41cdab8-1260-427d-acad-b3474d622e92/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF588ZLF|/files/ENCFF588ZLF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF588ZLF|/files/ENCFF588ZLF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.32. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR479HKJ | float |
Histone_ChIP-seq_ENCSR479HKJ |
Histone_ChIP-seq ENCSR479HKJ [biosample_summary="Homo sapiens GM23248" and target="H3K4me3"]
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[1.67, 39.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF123ETI.bed.gz | 1.38 MB | 2427f796dac4c95eb56f19bc54f32e95 |
| ENCFF123ETI.bed.gz.dvc | 101.0 B | 03eadea0b30dc7c9985400c9f6dafd55 |
| ENCFF123ETI.tabix.bed.gz | 584.08 KB | dde55a6f7d3bb1950a90ded0e9a5cdc9 |
| ENCFF123ETI.tabix.bed.gz.dvc | 106.0 B | ac23506e6af2f8d2b00e7da656c21a4b |
| ENCFF123ETI.tabix.bed.gz.tbi | 256.69 KB | 9b2f88492faaafab2d126b75875397e2 |
| ENCFF123ETI.tabix.bed.gz.tbi.dvc | 110.0 B | 8a2f311993bd1eba38b5dead3500847d |
| genomic_resource.yaml | 2.91 KB | 30ecbc98a82e530ac8ded2d65d288970 |
| genomic_resource_original.yaml | 2.8 KB | 844bfad8b47a78a7374d0e37a9857c1e |
| statistics/ |