Resource

Id Histone_ChIP-seq/ENCSR479GPUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR479GPU [biosample_summary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR479GPU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue female adult (53 years)
  • date_created: 2017-01-24T04:40:50.487443+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR479GPU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR479GPU float

Histone_ChIP-seq_ENCSR479GPU
Histone_ChIP-seq ENCSR479GPU [biosample_summary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR479GPU [1.49, 9.54]
n
19,890,054
mean
3.78
sd
1.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 198900540.62% 28032
chr1 1228754 0.49% 1929
chr2 1351040 0.56% 2218
chr3 1105119 0.56% 1773
chr4 1097203 0.58% 1643
chr5 1422741 0.78% 1908
chr6 882468 0.52% 1438
chr7 976954 0.61% 1458
chr8 850644 0.59% 1370
chr9 808364 0.58% 1119
chr10 792130 0.59% 1193
chr11 763397 0.57% 1210
chr12 1023444 0.77% 1382
chr13 410986 0.36% 735
chr14 462900 0.43% 758
chr15 559959 0.55% 863
chr16 508884 0.56% 679
chr17 293129 0.35% 421
chr18 353508 0.44% 569
chr19 3410956 5.82% 2709
chr20 249785 0.39% 420
chr21 237914 0.51% 377
chr22 191035 0.38% 290
chrX 908740 0.58% 1570
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28032 200 30783 709.55 516
global segment-length histogram

Files

Filename Size md5
ENCFF671DNU.bed.gz 523.05 KB d2b01b3448dd94a0cb84b12a1818412a
ENCFF671DNU.tabix.bed.gz 276.8 KB b4eab459f2b8033b5b7101314e2ca642
ENCFF671DNU.tabix.bed.gz.tbi 148.92 KB 341f0881152304c0bc51b9702cf96650
genomic_resource.yaml 1.72 KB 3d48b35f4621f46522cc1d34460f6a1e
statistics/