Histone_ChIP-seq_ENCSR479BPF
Histone_ChIP-seq ENCSR479BPF [biosample_summary="Homo sapiens brain tissue female embryo (120 days)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR479BPF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR479BPF [biosamplesummary="Homo sapiens brain tissue female embryo (120 days)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (120 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN168TVN|/analyses/ENCAN168TVN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF684CAP|/files/ENCFF684CAP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19419471 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF684CAP|/files/ENCFF684CAP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF684CAP|/files/ENCFF684CAP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR479BPF | float |
Histone_ChIP-seq_ENCSR479BPF |
Histone_ChIP-seq ENCSR479BPF [biosample_summary="Homo sapiens brain tissue female embryo (120 days)" and target="H3K27me3"]
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[2, 58.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF591RMN.bed.gz | 1.16 MB | 3e34804b4e6ebde06c85c0e9a8d818b2 |
| ENCFF591RMN.bed.gz.dvc | 101.0 B | 7361183cf5255e401ea9626c61719a64 |
| ENCFF591RMN.tabix.bed.gz | 609.35 KB | 4399d615a4217aee0b6063e77c6b428a |
| ENCFF591RMN.tabix.bed.gz.dvc | 106.0 B | 92c103d9431e327de9f2266e255e08d4 |
| ENCFF591RMN.tabix.bed.gz.tbi | 165.67 KB | 799e8130c61197617e0717183da45792 |
| ENCFF591RMN.tabix.bed.gz.tbi.dvc | 110.0 B | acbf1f9bfe820cfb708739e33732ad22 |
| genomic_resource.yaml | 3.24 KB | c2ae66b81cc817310362c09316482bc6 |
| genomic_resource_original.yaml | 3.1 KB | 6f220d59fffceff891e3dee9360a6400 |
| statistics/ |