Resource
| Id | Histone_ChIP-seq/ENCSR475HRT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR475HRT [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 2 summary: female adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN048EFM|/analyses/ENCAN048EFM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF447KKR|/files/ENCFF447KKR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 30891787 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR475HRT | float |
Histone_ChIP-seq_ENCSR475HRT |
Histone_ChIP-seq ENCSR475HRT [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K4me1"]
|
 |
[1.74, 36.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46100671 | 1.43% | 84737 |
| chr1 | 4823135 | 1.94% | 8418 |
| chr2 | 3958079 | 1.63% | 7153 |
| chr3 | 3302718 | 1.67% | 6212 |
| chr4 | 1968610 | 1.03% | 3931 |
| chr5 | 2215313 | 1.22% | 4243 |
| chr6 | 2221676 | 1.30% | 4472 |
| chr7 | 2040591 | 1.28% | 4035 |
| chr8 | 1812877 | 1.25% | 3531 |
| chr9 | 2410395 | 1.74% | 4220 |
| chr10 | 2845537 | 2.13% | 5039 |
| chr11 | 2659053 | 1.97% | 4567 |
| chr12 | 2441143 | 1.83% | 4493 |
| chr13 | 1120552 | 0.98% | 2180 |
| chr14 | 1734743 | 1.62% | 3010 |
| chr15 | 1593784 | 1.56% | 2992 |
| chr16 | 1503335 | 1.66% | 2717 |
| chr17 | 2280495 | 2.74% | 3832 |
| chr18 | 823766 | 1.02% | 1642 |
| chr19 | 1325430 | 2.26% | 2419 |
| chr20 | 1221326 | 1.90% | 2214 |
| chr21 | 436940 | 0.94% | 849 |
| chr22 | 1057114 | 2.08% | 1761 |
| chrX | 304059 | 0.19% | 807 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 84737 | 170 | 12686 | 544.04 | 418 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF983BCH.bed.gz | 1.66 MB | 80358e8a2bacdae32c6f1b203489bc7c |
| ENCFF983BCH.tabix.bed.gz | 844.99 KB | 9d816699381c22f7b22144b2495eda1c |
| ENCFF983BCH.tabix.bed.gz.tbi | 254.75 KB | 7a90110327c44da478d757937e6874e7 |
| genomic_resource.yaml | 2.06 KB | c3c5ba66fb734cc2c8cf785ba0d0ee9e |
| statistics/ |