Resource
| Id | Histone_ChIP-seq/ENCSR473ZFG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR473ZFG [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (38 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN735BGJ|/analyses/ENCAN735BGJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF925NEX|/files/ENCFF925NEX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23340483 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR473ZFG | float |
Histone_ChIP-seq_ENCSR473ZFG |
Histone_ChIP-seq ENCSR473ZFG [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K4me1"]
|
 |
[1.36, 10.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25153733 | 0.78% | 52865 |
| chr1 | 2730914 | 1.10% | 5601 |
| chr2 | 1768013 | 0.73% | 3834 |
| chr3 | 1429371 | 0.72% | 3109 |
| chr4 | 861013 | 0.45% | 1958 |
| chr5 | 1211326 | 0.67% | 2638 |
| chr6 | 1161968 | 0.68% | 2655 |
| chr7 | 1231179 | 0.77% | 2699 |
| chr8 | 1002377 | 0.69% | 2134 |
| chr9 | 1223972 | 0.88% | 2505 |
| chr10 | 1179541 | 0.88% | 2482 |
| chr11 | 1557161 | 1.15% | 3106 |
| chr12 | 1087007 | 0.82% | 2346 |
| chr13 | 413533 | 0.36% | 985 |
| chr14 | 919416 | 0.86% | 1885 |
| chr15 | 896525 | 0.88% | 1822 |
| chr16 | 1163846 | 1.29% | 2265 |
| chr16_KI270728v1_random | 2684 | 0.14% | 6 |
| chr17 | 1407434 | 1.69% | 2808 |
| chr17_GL000205v2_random | 3366 | 1.81% | 8 |
| chr18 | 384741 | 0.48% | 907 |
| chr19 | 1422816 | 2.43% | 2877 |
| chr20 | 841981 | 1.31% | 1697 |
| chr21 | 291592 | 0.62% | 637 |
| chr22 | 829079 | 1.63% | 1511 |
| chr22_KI270732v1_random | 750 | 1.81% | 1 |
| chr22_KI270735v1_random | 299 | 0.70% | 1 |
| chrUn_GL000195v1 | 356 | 0.19% | 1 |
| chrUn_GL000214v1 | 260 | 0.19% | 1 |
| chrUn_KI270438v1 | 415 | 0.37% | 1 |
| chrUn_KI270744v1 | 1009 | 0.60% | 2 |
| chrUn_KI270749v1 | 207 | 0.13% | 1 |
| chrUn_KI270755v1 | 249 | 0.68% | 1 |
| chrUn_KI270757v1 | 264 | 0.37% | 1 |
| chrX | 126935 | 0.08% | 372 |
| chrY | 2134 | <0.01% | 8 |
| 3331 contigs with no values (126066057 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 52865 | 160 | 3970 | 475.81 | 397 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF164IIN.bed.gz | 984.71 KB | 531c7d095861f91275f6639694237660 |
| ENCFF164IIN.tabix.bed.gz | 511.78 KB | 9800e879dee3d328c1caff78c008ef20 |
| ENCFF164IIN.tabix.bed.gz.tbi | 210.87 KB | 75739721f8e6f691c063475dfbebad9f |
| genomic_resource.yaml | 2.01 KB | ec30d63f8f9e9f1e20c5fcfb8ccea41b |
| statistics/ |