Histone_ChIP-seq_ENCSR470PLJ
Histone_ChIP-seq ENCSR470PLJ [biosample_summary="Homo sapiens HUES64" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR470PLJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR470PLJ [biosamplesummary="Homo sapiens HUES64" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN078IXZ|/analyses/ENCAN078IXZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN078IXZ|/analyses/ENCAN078IXZ/} has in progress subobject document {b2e237eb-1387-4b74-8a51-0735238443ed|/documents/b2e237eb-1387-4b74-8a51-0735238443ed/} audit_warning: Processed alignments file {ENCFF527MTC|/files/ENCFF527MTC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19631192 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF527MTC|/files/ENCFF527MTC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF527MTC|/files/ENCFF527MTC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR470PLJ | float |
Histone_ChIP-seq_ENCSR470PLJ |
Histone_ChIP-seq ENCSR470PLJ [biosample_summary="Homo sapiens HUES64" and target="H3K9ac"]
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[1.59, 98.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF779CSR.bed.gz | 1.14 MB | 88f0adb578d8e7eddacdca196479d124 |
| ENCFF779CSR.bed.gz.dvc | 101.0 B | 3159898a1167e46b2c060b9482a0f1da |
| ENCFF779CSR.tabix.bed.gz | 496.59 KB | 7c4bf8c0efc61bd14556edde6951a765 |
| ENCFF779CSR.tabix.bed.gz.dvc | 106.0 B | ce4869bbdf7d436575abf9edf6915e50 |
| ENCFF779CSR.tabix.bed.gz.tbi | 211.58 KB | 5d05371b2efd6a666283bad9cacab7d7 |
| ENCFF779CSR.tabix.bed.gz.tbi.dvc | 110.0 B | 5e25cda4ce8c0345961b8f31efbab757 |
| genomic_resource.yaml | 3.41 KB | 7956f29b7f433c41400db9c1d56811a4 |
| genomic_resource_original.yaml | 3.3 KB | 9c39c1293149e3431d4ccd0f963428dc |
| statistics/ |