Histone_ChIP-seq_ENCSR468DOT
Histone_ChIP-seq ENCSR468DOT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR468DOT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR468DOT [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN568WMM|/analyses/ENCAN568WMM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF062ITX|/files/ENCFF062ITX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF062ITX|/files/ENCFF062ITX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR468DOT | float |
Histone_ChIP-seq_ENCSR468DOT |
Histone_ChIP-seq ENCSR468DOT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K27me3"]
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[1.66, 17] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF419QVS.bed.gz | 1.64 MB | e46673fc0aa37f16142df46c3513cfae |
| ENCFF419QVS.bed.gz.dvc | 101.0 B | 9e9435603fa87a3e1f4475778e7aa1b9 |
| ENCFF419QVS.tabix.bed.gz | 859.87 KB | f4d1d49c0d7db0a511c702ccf4de322e |
| ENCFF419QVS.tabix.bed.gz.dvc | 106.0 B | cf2c08ff51e8222a7e1b85e9bfce9078 |
| ENCFF419QVS.tabix.bed.gz.tbi | 201.83 KB | e685feb59e16363190d3f3e4df251f1e |
| ENCFF419QVS.tabix.bed.gz.tbi.dvc | 110.0 B | 5d53ad62556c413f1b14c9bf6ff11ca4 |
| genomic_resource.yaml | 2.8 KB | b9811ec027cb424ff6f679c6c31e618f |
| genomic_resource_original.yaml | 2.65 KB | 64af195d17560e5f4c9c4273500461aa |
| statistics/ |