Resource
| Id | Histone_ChIP-seq/ENCSR468DOT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR468DOT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN568WMM|/analyses/ENCAN568WMM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF062ITX|/files/ENCFF062ITX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF062ITX|/files/ENCFF062ITX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.86. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR468DOT | float |
Histone_ChIP-seq_ENCSR468DOT |
Histone_ChIP-seq ENCSR468DOT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K27me3"]
|
 |
[1.66, 17] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 100899443 | 3.14% | 91993 |
| chr1 | 10260605 | 4.12% | 9263 |
| chr2 | 7691083 | 3.18% | 7334 |
| chr3 | 3795962 | 1.91% | 3676 |
| chr4 | 3398550 | 1.79% | 2912 |
| chr5 | 4923157 | 2.71% | 4253 |
| chr6 | 5755006 | 3.37% | 4597 |
| chr7 | 5126565 | 3.22% | 4682 |
| chr8 | 4338562 | 2.99% | 4125 |
| chr9 | 3859145 | 2.79% | 3534 |
| chr10 | 5599040 | 4.18% | 5297 |
| chr11 | 5055004 | 3.74% | 4840 |
| chr12 | 5259866 | 3.95% | 4827 |
| chr13 | 2371182 | 2.07% | 2126 |
| chr14 | 3749936 | 3.50% | 3517 |
| chr15 | 3293608 | 3.23% | 3237 |
| chr16 | 3885848 | 4.30% | 3812 |
| chr17 | 5784230 | 6.95% | 4696 |
| chr18 | 1884562 | 2.34% | 1905 |
| chr19 | 5118081 | 8.73% | 4365 |
| chr20 | 4910179 | 7.62% | 4434 |
| chr21 | 1171904 | 2.51% | 1128 |
| chr22 | 3137718 | 6.17% | 2915 |
| chrX | 512193 | 0.33% | 498 |
| chrY | 17457 | 0.03% | 20 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91993 | 215 | 78349 | 1096.82 | 689 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF419QVS.bed.gz | 1.64 MB | e46673fc0aa37f16142df46c3513cfae |
| ENCFF419QVS.tabix.bed.gz | 859.87 KB | f4d1d49c0d7db0a511c702ccf4de322e |
| ENCFF419QVS.tabix.bed.gz.tbi | 201.83 KB | e685feb59e16363190d3f3e4df251f1e |
| genomic_resource.yaml | 2.8 KB | b9811ec027cb424ff6f679c6c31e618f |
| statistics/ |