Resource
| Id | Histone_ChIP-seq/ENCSR466XPN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR466XPN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN738JFE|/analyses/ENCAN738JFE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN738JFE|/analyses/ENCAN738JFE/} has in progress subobject document {d004137d-3db5-40cd-8c3a-b77bb33283a6|/documents/d004137d-3db5-40cd-8c3a-b77bb33283a6/} audit_not_compliant: Processed alignments file {ENCFF074VHB|/files/ENCFF074VHB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20072676 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR466XPN | float |
Histone_ChIP-seq_ENCSR466XPN |
Histone_ChIP-seq ENCSR466XPN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)" and target="H3K4me1"]
|
 |
[1.98, 59.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 110936169 | 3.45% | 121680 |
| chr1 | 11121302 | 4.47% | 11908 |
| chr2 | 8309081 | 3.43% | 9469 |
| chr3 | 6152478 | 3.10% | 7447 |
| chr4 | 3230113 | 1.70% | 4211 |
| chr5 | 4982969 | 2.74% | 5820 |
| chr6 | 6128368 | 3.59% | 7280 |
| chr7 | 4947552 | 3.10% | 5831 |
| chr8 | 4061922 | 2.80% | 4773 |
| chr9 | 4340447 | 3.14% | 4593 |
| chr10 | 5150044 | 3.85% | 5655 |
| chr11 | 5829012 | 4.32% | 5852 |
| chr12 | 5382685 | 4.04% | 6104 |
| chr13 | 2264269 | 1.98% | 2837 |
| chr14 | 4242404 | 3.96% | 4504 |
| chr15 | 3764237 | 3.69% | 4180 |
| chr16 | 4926871 | 5.45% | 4783 |
| chr17 | 7130447 | 8.56% | 6798 |
| chr18 | 1724165 | 2.15% | 2131 |
| chr19 | 6551312 | 11.18% | 5851 |
| chr20 | 3337644 | 5.18% | 3449 |
| chr21 | 1351942 | 2.89% | 1499 |
| chr22 | 3224385 | 6.34% | 3003 |
| chrX | 2637103 | 1.69% | 3476 |
| chrY | 145417 | 0.25% | 226 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 121680 | 185 | 37390 | 911.7 | 612 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF033TEB.bed.gz | 2.73 MB | 94f8aef7723a92a55ce0e8ce93021d35 |
| ENCFF033TEB.tabix.bed.gz | 1.23 MB | 2f6979f6c85444016a273eab0b5abc7d |
| ENCFF033TEB.tabix.bed.gz.tbi | 255.12 KB | ddab426736f5ac5b53b98c0ae973b54b |
| genomic_resource.yaml | 2.25 KB | b1e77743a9107fa9cb545b774c5b70de |
| statistics/ |