Histone_ChIP-seq_ENCSR466DUB
Histone_ChIP-seq ENCSR466DUB [biosample_summary="Homo sapiens spleen tissue male adult (34 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR466DUB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR466DUB [biosamplesummary="Homo sapiens spleen tissue male adult (34 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN996IFR|/analyses/ENCAN996IFR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF011YZH|/files/ENCFF011YZH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18084377 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF011YZH|/files/ENCFF011YZH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF011YZH|/files/ENCFF011YZH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.11. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR466DUB | float |
Histone_ChIP-seq_ENCSR466DUB |
Histone_ChIP-seq ENCSR466DUB [biosample_summary="Homo sapiens spleen tissue male adult (34 years)" and target="H3K36me3"]
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[2, 39.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF224MXB.bed.gz | 2.17 MB | 0e196cafa770c749b196d7a2616949b9 |
| ENCFF224MXB.bed.gz.dvc | 101.0 B | 563bccf55f3bbe754588a40554c3c3ac |
| ENCFF224MXB.tabix.bed.gz | 1.04 MB | c9e1f07c596af15245ecb1411fd845f1 |
| ENCFF224MXB.tabix.bed.gz.dvc | 107.0 B | c47ca6e13b9942b47cd94de985bae474 |
| ENCFF224MXB.tabix.bed.gz.tbi | 189.19 KB | 6a85250625ce814bbe9808675ec7b0d6 |
| ENCFF224MXB.tabix.bed.gz.tbi.dvc | 110.0 B | f7e783c05420d59af966546b42312072 |
| genomic_resource.yaml | 3.22 KB | deb8e74bfae6c6e346c9b4f012e6158b |
| genomic_resource_original.yaml | 3.09 KB | 65e117206f63f4fbf9d304e41064a23a |
| statistics/ |