Resource

Id Histone_ChIP-seq/ENCSR464TRMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR464TRM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR464TRM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue male adult (54 years)
  • date_created: 2017-12-06T21:20:57.372369+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR464TRM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR464TRM float

Histone_ChIP-seq_ENCSR464TRM
Histone_ChIP-seq ENCSR464TRM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR464TRM [1.61, 44.5]
n
38,908,920
mean
18.8
sd
9.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 389089201.21% 25960
chr1 3883359 1.56% 2533
chr2 2645610 1.09% 1727
chr3 2185125 1.10% 1399
chr4 1563808 0.82% 993
chr5 1832239 1.01% 1142
chr6 2298429 1.35% 1458
chr7 1894430 1.19% 1337
chr8 1439552 0.99% 967
chr9 1574009 1.14% 1086
chr10 1674065 1.25% 1139
chr11 2122013 1.57% 1346
chr12 2070989 1.55% 1334
chr13 817773 0.72% 548
chr14 1275901 1.19% 809
chr15 1283535 1.26% 835
chr16 1502059 1.66% 1075
chr17 2310238 2.77% 1533
chr18 673209 0.84% 494
chr19 2443208 4.17% 1727
chr20 974865 1.51% 674
chr21 406664 0.87% 287
chr22 883838 1.74% 637
chrX 1112955 0.71% 849
chrY 41047 0.07% 31
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25960 205 16924 1498.8 1293
global segment-length histogram

Files

Filename Size md5
ENCFF908QLA.bed.gz 693.71 KB 6a7daa213783d99a4632c12ab81352f2
ENCFF908QLA.tabix.bed.gz 299.87 KB d8df5565ea73985dfd6d9fd43327c4fd
ENCFF908QLA.tabix.bed.gz.tbi 160.67 KB 3380d096cec83bcfcca1cb5027073e7a
genomic_resource.yaml 1.5 KB 50e1db19ad13a85b76d5483bb447f193
statistics/