Histone_ChIP-seq_ENCSR463DSJ
Histone_ChIP-seq ENCSR463DSJ [biosample_summary="Homo sapiens DOHH2" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR463DSJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR463DSJ [biosamplesummary="Homo sapiens DOHH2" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN254EQS|/analyses/ENCAN254EQS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN254EQS|/analyses/ENCAN254EQS/} has in progress subobject document {15099d6e-e0a0-400e-88fc-92cff8338bf1|/documents/15099d6e-e0a0-400e-88fc-92cff8338bf1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF076WOK|/files/ENCFF076WOK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF076WOK|/files/ENCFF076WOK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.08. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF941LOM|/files/ENCFF941LOM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF941LOM|/files/ENCFF941LOM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR463DSJ | float |
Histone_ChIP-seq_ENCSR463DSJ |
Histone_ChIP-seq ENCSR463DSJ [biosample_summary="Homo sapiens DOHH2" and target="H3K9me2"]
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[1.81, 4.02] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF833KLI.bed.gz | 10.43 KB | 7bcceccbb7d5d2c2d5e13720bd66e20f |
| ENCFF833KLI.bed.gz.dvc | 99.0 B | d0bca37491cef0eb9170d18c8e5a4098 |
| ENCFF833KLI.tabix.bed.gz | 5.63 KB | 3118d748edf9000e39c19dfebf433af7 |
| ENCFF833KLI.tabix.bed.gz.dvc | 104.0 B | 3070f2143c2c835bb75b1761fdd04eb8 |
| ENCFF833KLI.tabix.bed.gz.tbi | 9.74 KB | 24abe6d13cbbac25cc8e1994ab8febbc |
| ENCFF833KLI.tabix.bed.gz.tbi.dvc | 108.0 B | 646202f601a3216154d9ac8f46c90672 |
| genomic_resource.yaml | 4.21 KB | a353ae03ce318cdbc1cb95658d68c1cd |
| genomic_resource_original.yaml | 4.1 KB | cedf428b4de1560b47a2408f6a20d444 |
| statistics/ |