Resource
| Id | Histone_ChIP-seq/ENCSR463DSJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR463DSJ [biosample_summary="Homo sapiens DOHH2" and target="H3K9me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN254EQS|/analyses/ENCAN254EQS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN254EQS|/analyses/ENCAN254EQS/} has in progress subobject document {15099d6e-e0a0-400e-88fc-92cff8338bf1|/documents/15099d6e-e0a0-400e-88fc-92cff8338bf1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF076WOK|/files/ENCFF076WOK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF076WOK|/files/ENCFF076WOK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.08. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF941LOM|/files/ENCFF941LOM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF941LOM|/files/ENCFF941LOM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR463DSJ | float |
Histone_ChIP-seq_ENCSR463DSJ |
Histone_ChIP-seq ENCSR463DSJ [biosample_summary="Homo sapiens DOHH2" and target="H3K9me2"]
|
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[1.81, 4.02] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 133164 | <0.01% | 526 |
| chr1 | 8599 | <0.01% | 35 |
| chr2 | 9942 | <0.01% | 42 |
| chr3 | 7238 | <0.01% | 30 |
| chr4 | 11325 | 0.01% | 46 |
| chr5 | 9563 | 0.01% | 41 |
| chr6 | 7696 | <0.01% | 30 |
| chr7 | 41131 | 0.03% | 148 |
| chr8 | 6137 | <0.01% | 26 |
| chr9 | 3459 | <0.01% | 15 |
| chr10 | 4401 | <0.01% | 17 |
| chr11 | 4165 | <0.01% | 16 |
| chr12 | 3580 | <0.01% | 14 |
| chr13 | 4494 | <0.01% | 20 |
| chr14 | 2245 | <0.01% | 9 |
| chr15 | 1352 | <0.01% | 6 |
| chr16 | 502 | <0.01% | 2 |
| chr17 | 633 | <0.01% | 3 |
| chr18 | 3163 | <0.01% | 13 |
| chr19 | 639 | <0.01% | 1 |
| chr20 | 951 | <0.01% | 4 |
| chr21 | 895 | <0.01% | 4 |
| chr22 | 763 | <0.01% | 3 |
| chrX | 291 | <0.01% | 1 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 526 | 188 | 675 | 253.16 | 236 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF833KLI.bed.gz | 10.43 KB | 7bcceccbb7d5d2c2d5e13720bd66e20f |
| ENCFF833KLI.tabix.bed.gz | 5.63 KB | 3118d748edf9000e39c19dfebf433af7 |
| ENCFF833KLI.tabix.bed.gz.tbi | 9.74 KB | 24abe6d13cbbac25cc8e1994ab8febbc |
| genomic_resource.yaml | 4.21 KB | a353ae03ce318cdbc1cb95658d68c1cd |
| statistics/ |
