Histone_ChIP-seq_ENCSR461LTR
Histone_ChIP-seq ENCSR461LTR [biosample_summary="Homo sapiens MM.1S" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR461LTR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR461LTR [biosamplesummary="Homo sapiens MM.1S" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN743GUQ|/analyses/ENCAN743GUQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN743GUQ|/analyses/ENCAN743GUQ/} has in progress subobject document {1290f0f6-66d9-4bec-805d-66c69c14a6fa|/documents/1290f0f6-66d9-4bec-805d-66c69c14a6fa/} audit_not_compliant: Processed unfiltered alignments file {ENCFF776ZIB|/files/ENCFF776ZIB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 31761003 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF193NKB|/files/ENCFF193NKB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF193NKB|/files/ENCFF193NKB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR461LTR | float |
Histone_ChIP-seq_ENCSR461LTR |
Histone_ChIP-seq ENCSR461LTR [biosample_summary="Homo sapiens MM.1S" and target="H3K9me3"]
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[1.97, 4.56] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF853UHY.bed.gz | 15.42 KB | accfdb467967b24ca39b4d0f521a3ffd |
| ENCFF853UHY.bed.gz.dvc | 99.0 B | 89a1fd44e981af36d0bce2d319857ea4 |
| ENCFF853UHY.tabix.bed.gz | 7.73 KB | af5c4ded554e468bf0a9173ba4cdba8c |
| ENCFF853UHY.tabix.bed.gz.dvc | 104.0 B | 05d89a24a16b2cb72a3ed0c757fd0864 |
| ENCFF853UHY.tabix.bed.gz.tbi | 11.88 KB | 8cc29f0ff61c5606a7780ee3872aa6b4 |
| ENCFF853UHY.tabix.bed.gz.tbi.dvc | 109.0 B | ad0d5721efe9e31aea08b91e52f055ea |
| genomic_resource.yaml | 3.41 KB | bc0a76fd9c86b09c0aa130158415c944 |
| genomic_resource_original.yaml | 3.3 KB | 78788b3581088a3a3757f78e28f21cb6 |
| statistics/ |