Histone_ChIP-seq_ENCSR461HUD
Histone_ChIP-seq ENCSR461HUD [biosample_summary="Homo sapiens PC-3" and target="H3F3A"]
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| Id: | Histone_ChIP-seq/ENCSR461HUD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR461HUD [biosamplesummary="Homo sapiens PC-3" and target="H3F3A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN630BQD|/analyses/ENCAN630BQD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF504OYD|/files/ENCFF504OYD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF504OYD|/files/ENCFF504OYD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR461HUD | float |
Histone_ChIP-seq_ENCSR461HUD |
Histone_ChIP-seq ENCSR461HUD [biosample_summary="Homo sapiens PC-3" and target="H3F3A"]
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[1.5, 9.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF668JHY.bed.gz | 344.59 KB | a0e2ef44272b800ca2d1abc336e7eecb |
| ENCFF668JHY.bed.gz.dvc | 100.0 B | 28235ffde86ea693bf5c6420dd278044 |
| ENCFF668JHY.tabix.bed.gz | 165.65 KB | 4fc78b2301638180dd1d0184b6859ae6 |
| ENCFF668JHY.tabix.bed.gz.dvc | 106.0 B | c918f4def2df6d7e60f577ff5e565367 |
| ENCFF668JHY.tabix.bed.gz.tbi | 98.23 KB | 4ffeead84a54a29ed3d25adaa8059946 |
| ENCFF668JHY.tabix.bed.gz.tbi.dvc | 110.0 B | 747af252f62516a4bcef2cdc10118048 |
| genomic_resource.yaml | 2.71 KB | 05cd99a263a783c7c02c2633c5500c5c |
| genomic_resource_original.yaml | 2.61 KB | 9b627bb0f6437db540bb6f91f2da19af |
| statistics/ |