Histone_ChIP-seq_ENCSR460SEN
Histone_ChIP-seq ENCSR460SEN [biosample_summary="Homo sapiens DOHH2" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR460SEN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR460SEN [biosamplesummary="Homo sapiens DOHH2" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN846CEQ|/analyses/ENCAN846CEQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN846CEQ|/analyses/ENCAN846CEQ/} has in progress subobject document {909a6a9f-d1b5-4fb3-91ab-f3588a9e1566|/documents/909a6a9f-d1b5-4fb3-91ab-f3588a9e1566/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF732FGD|/files/ENCFF732FGD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF732FGD|/files/ENCFF732FGD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.53. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF090UDZ|/files/ENCFF090UDZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF090UDZ|/files/ENCFF090UDZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR460SEN | float |
Histone_ChIP-seq_ENCSR460SEN |
Histone_ChIP-seq ENCSR460SEN [biosample_summary="Homo sapiens DOHH2" and target="H3K4me1"]
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[1.53, 34.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF708CCJ.bed.gz | 2.83 MB | c31399eddd7ea94cbb3b06563aa6acad |
| ENCFF708CCJ.bed.gz.dvc | 101.0 B | cf89954422cc86b3635c1cc3013c7591 |
| ENCFF708CCJ.tabix.bed.gz | 1.2 MB | 858898134c5e95db18c292006a605227 |
| ENCFF708CCJ.tabix.bed.gz.dvc | 107.0 B | cf92792475780c03a8b596513e55d94b |
| ENCFF708CCJ.tabix.bed.gz.tbi | 269.0 KB | 3346348873b550a125fedc12382e7b7d |
| ENCFF708CCJ.tabix.bed.gz.tbi.dvc | 110.0 B | df97929c6451bd9b44fd83b3b17c5a96 |
| genomic_resource.yaml | 4.22 KB | 827c09d061a8829a3269b864cafd835d |
| genomic_resource_original.yaml | 4.11 KB | 002d9d6dc045b3ec4fb175031a207736 |
| statistics/ |