Resource
| Id | Histone_ChIP-seq/ENCSR460RHN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR460RHN [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (31 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN446LCS|/analyses/ENCAN446LCS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF847JST|/files/ENCFF847JST/} processed by ChIP-seq ENCODE3 hg19 pipeline has 34303253 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR460RHN | float |
Histone_ChIP-seq_ENCSR460RHN |
Histone_ChIP-seq ENCSR460RHN [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K36me3"]
|
 |
[1.89, 20.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 76405659 | 2.37% | 120225 |
| chr1 | 7623338 | 3.06% | 11659 |
| chr2 | 5702315 | 2.35% | 9533 |
| chr3 | 4682238 | 2.36% | 7493 |
| chr4 | 2760660 | 1.45% | 5009 |
| chr5 | 3674969 | 2.02% | 6086 |
| chr6 | 3332807 | 1.95% | 5481 |
| chr7 | 3313087 | 2.08% | 5416 |
| chr8 | 2507976 | 1.73% | 4335 |
| chr9 | 3596239 | 2.60% | 5484 |
| chr10 | 3357860 | 2.51% | 5539 |
| chr11 | 4147734 | 3.07% | 6144 |
| chr12 | 4465636 | 3.35% | 6842 |
| chr13 | 1485767 | 1.30% | 2640 |
| chr14 | 2697893 | 2.52% | 4335 |
| chr15 | 2857819 | 2.80% | 4588 |
| chr16 | 3626571 | 4.01% | 5170 |
| chr17 | 4205860 | 5.05% | 6182 |
| chr18 | 1148995 | 1.43% | 2088 |
| chr19 | 4470800 | 7.63% | 6119 |
| chr20 | 2403346 | 3.73% | 3531 |
| chr21 | 1012939 | 2.17% | 1505 |
| chr22 | 2052853 | 4.04% | 2842 |
| chrX | 1277957 | 0.82% | 2204 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 120225 | 160 | 26586 | 635.52 | 429 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF726AYF.bed.gz | 2.25 MB | bf2625d9d037175a962d566f4967489d |
| ENCFF726AYF.tabix.bed.gz | 1.16 MB | 44137971429834450f600c0ea6819322 |
| ENCFF726AYF.tabix.bed.gz.tbi | 159.11 KB | 9c12e2ee09fc59cdc51133678fb170d6 |
| genomic_resource.yaml | 1.98 KB | 71ba34a1db42b2f8f0360425dc0a81e7 |
| statistics/ |