Resource

Id Histone_ChIP-seq/ENCSR459GCScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR459GCS [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR459GCS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:20.058358+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR459GCS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR459GCS float

Histone_ChIP-seq_ENCSR459GCS
Histone_ChIP-seq ENCSR459GCS [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR459GCS [1.97, 16.6]
n
6,822,212
mean
4.49
sd
1.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68222120.21% 18800
chr1 726500 0.29% 1969
chr2 596353 0.25% 1660
chr3 414641 0.21% 1165
chr4 318374 0.17% 873
chr5 397389 0.22% 1076
chr6 456021 0.27% 1267
chr7 276634 0.17% 746
chr8 273837 0.19% 757
chr9 311337 0.22% 845
chr10 386409 0.29% 1078
chr11 396261 0.29% 1093
chr12 333174 0.25% 929
chr13 189066 0.17% 531
chr14 254778 0.24% 673
chr15 288420 0.28% 785
chr16 177137 0.20% 514
chr17 332464 0.40% 885
chr18 179516 0.22% 506
chr19 121465 0.21% 352
chr20 172480 0.27% 477
chr21 71644 0.15% 198
chr22 114909 0.23% 317
chrX 33403 0.02% 104
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18800 175 1993 362.88 315
global segment-length histogram

Files

Filename Size md5
ENCFF957GKF.bed.gz 344.59 KB a099632ea25e42a21752769951efad9d
ENCFF957GKF.tabix.bed.gz 186.29 KB adeb831e38b5c86172c6726b464dbc5e
ENCFF957GKF.tabix.bed.gz.tbi 115.9 KB 0aa08772101481c52f8df2bbe7b7b70a
genomic_resource.yaml 1.98 KB 3f78e6e41df13567d2d04975b0d8f82f
statistics/