Resource
| Id | Histone_ChIP-seq/ENCSR459BSA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR459BSA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN218DJU|/analyses/ENCAN218DJU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF689YAP|/files/ENCFF689YAP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF689YAP|/files/ENCFF689YAP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.80. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR459BSA | float |
Histone_ChIP-seq_ENCSR459BSA |
Histone_ChIP-seq ENCSR459BSA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K27me3"]
|
 |
[1.59, 8.63] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13343943 | 0.41% | 11941 |
| chr1 | 1188520 | 0.48% | 1164 |
| chr2 | 1058524 | 0.44% | 832 |
| chr3 | 446690 | 0.23% | 391 |
| chr4 | 569929 | 0.30% | 466 |
| chr5 | 784433 | 0.43% | 713 |
| chr6 | 985841 | 0.58% | 827 |
| chr7 | 819992 | 0.51% | 610 |
| chr8 | 508339 | 0.35% | 520 |
| chr9 | 550356 | 0.40% | 468 |
| chr10 | 735251 | 0.55% | 642 |
| chr11 | 508697 | 0.38% | 481 |
| chr12 | 644977 | 0.48% | 606 |
| chr13 | 348440 | 0.30% | 246 |
| chr14 | 481717 | 0.45% | 420 |
| chr15 | 358887 | 0.35% | 331 |
| chr16 | 428605 | 0.47% | 428 |
| chr17 | 894104 | 1.07% | 769 |
| chr18 | 205142 | 0.26% | 206 |
| chr19 | 766533 | 1.31% | 765 |
| chr20 | 575865 | 0.89% | 543 |
| chr21 | 169904 | 0.36% | 146 |
| chr22 | 274794 | 0.54% | 326 |
| chrX | 38403 | 0.02% | 41 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 11941 | 235 | 28136 | 1117.49 | 731 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF072BCY.bed.gz | 222.96 KB | 2dbad0f1e5bfa505031e91634d5196c6 |
| ENCFF072BCY.tabix.bed.gz | 118.08 KB | 3d00dcd64d1964e56ac700920c9ea209 |
| ENCFF072BCY.tabix.bed.gz.tbi | 57.78 KB | cd9134f28eefce64f7de3773802cb842 |
| genomic_resource.yaml | 2.79 KB | 1996b2473e67d63995887a5ec326e736 |
| statistics/ |