Histone_ChIP-seq_ENCSR459BSA
Histone_ChIP-seq ENCSR459BSA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR459BSA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR459BSA [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN218DJU|/analyses/ENCAN218DJU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF689YAP|/files/ENCFF689YAP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF689YAP|/files/ENCFF689YAP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR459BSA | float |
Histone_ChIP-seq_ENCSR459BSA |
Histone_ChIP-seq ENCSR459BSA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K27me3"]
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[1.59, 8.63] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF072BCY.bed.gz | 222.96 KB | 2dbad0f1e5bfa505031e91634d5196c6 |
| ENCFF072BCY.bed.gz.dvc | 100.0 B | 14f99331d823ed52f444b631285211b1 |
| ENCFF072BCY.tabix.bed.gz | 118.08 KB | 3d00dcd64d1964e56ac700920c9ea209 |
| ENCFF072BCY.tabix.bed.gz.dvc | 106.0 B | 136588f484fc25a3a853ad3e11b2063a |
| ENCFF072BCY.tabix.bed.gz.tbi | 57.78 KB | cd9134f28eefce64f7de3773802cb842 |
| ENCFF072BCY.tabix.bed.gz.tbi.dvc | 109.0 B | d3ee9d9253e211112016176026ca73cc |
| genomic_resource.yaml | 2.79 KB | 1996b2473e67d63995887a5ec326e736 |
| genomic_resource_original.yaml | 2.65 KB | 8ea671deb522bb1e6407a54118066823 |
| statistics/ |