Resource

Id Histone_ChIP-seq/ENCSR458WIHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR458WIH [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR458WIH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002107/
  • biosample_summary: Homo sapiens liver tissue male adult (31 years)
  • date_created: 2015-09-15T19:52:15.846561+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR458WIH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (31 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR458WIH float

Histone_ChIP-seq_ENCSR458WIH
Histone_ChIP-seq ENCSR458WIH [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR458WIH [1.82, 35.3]
n
33,271,314
mean
10.8
sd
5.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 332713141.03% 37474
chr1 3001624 1.21% 3192
chr1_KI270709v1_random 408 0.61% 2
chr1_KI270712v1_random 248 0.14% 1
chr2 2159566 0.89% 2320
chr3 1873179 0.94% 1915
chr4 1480150 0.78% 1632
chr4_GL000008v2_random 3714 1.77% 4
chr5 1678532 0.92% 1868
chr6 1795642 1.05% 1940
chr7 1515406 0.95% 1802
chr8 1178026 0.81% 1310
chr9 1298361 0.94% 1429
chr10 1459443 1.09% 1629
chr11 1614831 1.20% 1696
chr12 1772411 1.33% 1880
chr13 660625 0.58% 735
chr14 1020322 0.95% 1043
chr14_GL000225v1_random 405 0.19% 1
chr14_KI270722v1_random 262 0.14% 1
chr15 1004624 0.99% 1066
chr16 1231748 1.36% 1407
chr17 1565409 1.88% 1774
chr17_GL000205v2_random 2195 1.18% 2
chr17_KI270729v1_random 8700 3.10% 18
chr17_KI270730v1_random 3667 3.26% 10
chr18 564231 0.70% 621
chr19 3630667 6.19% 4955
chr20 738651 1.15% 816
chr21 348402 0.75% 419
chr22 596169 1.17% 698
chr22_KI270732v1_random 218 0.52% 1
chr22_KI270736v1_random 6663 3.66% 12
chrUn_GL000195v1 603 0.33% 1
chrUn_GL000216v2 44156 25.00% 49
chrUn_GL000219v1 724 0.40% 1
chrUn_GL000220v1 298 0.18% 1
chrUn_KI270429v1 389 28.58% 1
chrUn_KI270438v1 3335 2.96% 8
chrUn_KI270442v1 21281 5.43% 39
chrUn_KI270512v1 231 1.02% 1
chrUn_KI270519v1 554 0.40% 1
chrUn_KI270589v1 2566 5.77% 4
chrUn_KI270591v1 383 6.61% 1
chrUn_KI270747v1 228 0.11% 1
chrUn_KI270751v1 347 0.23% 1
chrUn_KI270756v1 366 0.46% 1
chrUn_KI270757v1 1045 1.47% 1
chrX 957483 0.61% 1126
chrY 22826 0.04% 38
3317 contigs with no values (125498972 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37474 180 13371 887.85 619
global segment-length histogram

Files

Filename Size md5
ENCFF726WMX.bed.gz 875.21 KB b0be3f9fe6fad804e61157d72dabb947
ENCFF726WMX.tabix.bed.gz 410.68 KB ff29dd22e4028be9c1382e1269f4b76b
ENCFF726WMX.tabix.bed.gz.tbi 167.09 KB 55b0f298a9c1cce3692ae10c4ae68ff7
genomic_resource.yaml 1.48 KB e3825df65dc808696b87057962b915cf
statistics/