Histone_ChIP-seq_ENCSR450JTP
Histone_ChIP-seq ENCSR450JTP [biosample_summary="Homo sapiens HAP-1" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR450JTP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR450JTP [biosamplesummary="Homo sapiens HAP-1" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN659LXJ|/analyses/ENCAN659LXJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF639UYT|/files/ENCFF639UYT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF639UYT|/files/ENCFF639UYT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF651JPK|/files/ENCFF651JPK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF651JPK|/files/ENCFF651JPK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR450JTP | float |
Histone_ChIP-seq_ENCSR450JTP |
Histone_ChIP-seq ENCSR450JTP [biosample_summary="Homo sapiens HAP-1" and target="H3K4me1"]
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[1.38, 13.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF086KDH.bed.gz | 2.83 MB | eba8d7a3d64a12db13d957c1c03eb053 |
| ENCFF086KDH.bed.gz.dvc | 101.0 B | d9d3f88a9aff36af86f4367ffcddfe78 |
| ENCFF086KDH.tabix.bed.gz | 1.24 MB | 48bfeb48be7120f9f9502a8d96ecc9a7 |
| ENCFF086KDH.tabix.bed.gz.dvc | 107.0 B | 6b3d19a493e1381e33e9e67e842bda05 |
| ENCFF086KDH.tabix.bed.gz.tbi | 374.12 KB | b8cb46d53375d6a060cc7fd88ff3a8ab |
| ENCFF086KDH.tabix.bed.gz.tbi.dvc | 110.0 B | 1626e4ee7f63e57b48f30a7963a6e0cc |
| genomic_resource.yaml | 4.0 KB | c4d43add40b6d2635bab7722cd64f48c |
| genomic_resource_original.yaml | 3.89 KB | cb651baed46063d71b073fcedafd6974 |
| statistics/ |