Resource
| Id | Histone_ChIP-seq/ENCSR449SFZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR449SFZ [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (28 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN945CRF|/analyses/ENCAN945CRF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF363BOX|/files/ENCFF363BOX/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 19852681 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR449SFZ | float |
Histone_ChIP-seq_ENCSR449SFZ |
Histone_ChIP-seq ENCSR449SFZ [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K36me3"]
|
 |
[1.8, 30.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 128053650 | 3.98% | 156772 |
| chr1 | 12583089 | 5.05% | 15508 |
| chr2 | 9067673 | 3.74% | 12889 |
| chr3 | 7480301 | 3.77% | 10089 |
| chr4 | 3997030 | 2.10% | 6063 |
| chr5 | 5901428 | 3.25% | 8156 |
| chr6 | 5387955 | 3.15% | 7593 |
| chr7 | 6124618 | 3.84% | 7822 |
| chr8 | 3996353 | 2.75% | 5627 |
| chr9 | 5388493 | 3.89% | 6357 |
| chr10 | 5441798 | 4.07% | 7423 |
| chr11 | 6488178 | 4.80% | 7286 |
| chr12 | 7114085 | 5.34% | 8235 |
| chr13 | 2301700 | 2.01% | 3591 |
| chr14 | 4492797 | 4.20% | 5758 |
| chr15 | 4525293 | 4.44% | 6198 |
| chr16 | 6900913 | 7.64% | 6655 |
| chr17 | 8623588 | 10.36% | 8716 |
| chr18 | 1839744 | 2.29% | 2782 |
| chr19 | 7446282 | 12.70% | 5786 |
| chr20 | 4377256 | 6.79% | 4720 |
| chr21 | 1625384 | 3.48% | 1757 |
| chr22 | 4188583 | 8.24% | 3564 |
| chrX | 2620023 | 1.68% | 3907 |
| chrY | 141086 | 0.25% | 290 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 156772 | 175 | 32666 | 816.81 | 509 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF485OQV.bed.gz | 3.43 MB | 2f81181e341e5f7619b498e23fbc5b74 |
| ENCFF485OQV.tabix.bed.gz | 1.56 MB | 363c6321a0298018c123d6d77361be42 |
| ENCFF485OQV.tabix.bed.gz.tbi | 172.47 KB | 3df8337c4ff6e57773a0497f11744e6b |
| genomic_resource.yaml | 2.05 KB | e74c3e0831a381bd45c8a13e98428315 |
| statistics/ |