Resource
| Id | Histone_ChIP-seq/ENCSR449PYI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR449PYI [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN015IIL|/analyses/ENCAN015IIL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN015IIL|/analyses/ENCAN015IIL/} has in progress subobject document {dcf0a2ac-0ef1-4a11-97c4-c4c2b44afa6e|/documents/dcf0a2ac-0ef1-4a11-97c4-c4c2b44afa6e/} audit_not_compliant: Processed alignments file {ENCFF601XMS|/files/ENCFF601XMS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27248585 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR449PYI | float |
Histone_ChIP-seq_ENCSR449PYI |
Histone_ChIP-seq ENCSR449PYI [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K4me1"]
|
 |
[1.81, 43] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54554286 | 1.70% | 118138 |
| chr1 | 5645912 | 2.27% | 11954 |
| chr2 | 4072921 | 1.68% | 9252 |
| chr3 | 2919963 | 1.47% | 6694 |
| chr4 | 1715888 | 0.90% | 4325 |
| chr5 | 2348858 | 1.29% | 5550 |
| chr6 | 2485256 | 1.46% | 6021 |
| chr7 | 2689603 | 1.69% | 6145 |
| chr8 | 2187146 | 1.51% | 5003 |
| chr9 | 2748844 | 1.99% | 5472 |
| chr10 | 2787030 | 2.08% | 6166 |
| chr11 | 3222042 | 2.39% | 6478 |
| chr12 | 2184858 | 1.64% | 4925 |
| chr13 | 1136733 | 0.99% | 2770 |
| chr14 | 1973716 | 1.84% | 4165 |
| chr15 | 1967079 | 1.93% | 4290 |
| chr16 | 2599338 | 2.88% | 5070 |
| chr17 | 3254508 | 3.91% | 6193 |
| chr18 | 967736 | 1.20% | 2379 |
| chr19 | 2877826 | 4.91% | 5149 |
| chr20 | 1666417 | 2.59% | 3510 |
| chr21 | 620875 | 1.33% | 1416 |
| chr22 | 1728168 | 3.40% | 3196 |
| chrX | 727113 | 0.47% | 1921 |
| chrY | 26456 | 0.05% | 94 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 118138 | 145 | 11292 | 461.78 | 356 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF313ODE.bed.gz | 2.54 MB | 11e5215753670b864d07b4737cfa6c06 |
| ENCFF313ODE.tabix.bed.gz | 1.17 MB | 35ce7d47a7632508ee1a75ab7a1fe063 |
| ENCFF313ODE.tabix.bed.gz.tbi | 333.92 KB | 0b3d3343f5c536144d6eedab06ddc4ae |
| genomic_resource.yaml | 2.19 KB | c50bdc1103ec2ecbc1a2278287297d74 |
| statistics/ |