Histone_ChIP-seq_ENCSR449AXO
Histone_ChIP-seq ENCSR449AXO [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR449AXO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR449AXO [biosamplesummary="Homo sapiens neural progenitor cell originated from H9" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN880UTM|/analyses/ENCAN880UTM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF508UMT|/files/ENCFF508UMT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF508UMT|/files/ENCFF508UMT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.14. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR449AXO | float |
Histone_ChIP-seq_ENCSR449AXO |
Histone_ChIP-seq ENCSR449AXO [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K27ac"]
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[1.31, 42.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF094QKU.bed.gz | 1.13 MB | f2f5ee1f0efd4f8fc3bcabf03dc4a2b8 |
| ENCFF094QKU.bed.gz.dvc | 101.0 B | f39d68eea98b39279312bab872f3b2c3 |
| ENCFF094QKU.tabix.bed.gz | 521.16 KB | 38a002c797da8a8920e826ed39b8bddc |
| ENCFF094QKU.tabix.bed.gz.dvc | 106.0 B | 53adbf401b382e3466281fb8ea3bf65e |
| ENCFF094QKU.tabix.bed.gz.tbi | 224.88 KB | df394f47f443a38b8544b8d5f8c1235c |
| ENCFF094QKU.tabix.bed.gz.tbi.dvc | 110.0 B | ce185ccc61a91068052771c20df3c98f |
| genomic_resource.yaml | 2.77 KB | 1ba1b37ac6a7cf17767dee22e2455f37 |
| genomic_resource_original.yaml | 2.63 KB | aa7b53bac29e228d33520af41f1a40fe |
| statistics/ |