Resource
| Id | Histone_ChIP-seq/ENCSR449AXO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR449AXO [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN880UTM|/analyses/ENCAN880UTM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF508UMT|/files/ENCFF508UMT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF508UMT|/files/ENCFF508UMT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.14. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR449AXO | float |
Histone_ChIP-seq_ENCSR449AXO |
Histone_ChIP-seq ENCSR449AXO [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K27ac"]
|
 |
[1.31, 42.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37018993 | 1.15% | 48097 |
| chr1 | 3453170 | 1.39% | 4436 |
| chr2 | 3053751 | 1.26% | 3979 |
| chr3 | 2466027 | 1.24% | 3183 |
| chr4 | 2086973 | 1.10% | 2627 |
| chr5 | 2100986 | 1.16% | 2722 |
| chr6 | 2271780 | 1.33% | 2893 |
| chr7 | 1969773 | 1.24% | 2572 |
| chr8 | 1561761 | 1.08% | 2028 |
| chr9 | 1584246 | 1.14% | 2074 |
| chr10 | 1650109 | 1.23% | 2153 |
| chr11 | 1837553 | 1.36% | 2424 |
| chr12 | 2202347 | 1.65% | 2724 |
| chr13 | 1110249 | 0.97% | 1412 |
| chr14 | 1284449 | 1.20% | 1665 |
| chr15 | 1110835 | 1.09% | 1399 |
| chr16 | 894751 | 0.99% | 1331 |
| chr17 | 1503061 | 1.81% | 1989 |
| chr18 | 1029679 | 1.28% | 1263 |
| chr19 | 967727 | 1.65% | 1397 |
| chr20 | 903534 | 1.40% | 1158 |
| chr21 | 308426 | 0.66% | 432 |
| chr22 | 648672 | 1.28% | 879 |
| chrX | 1018785 | 0.65% | 1356 |
| chrY | 349 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 48097 | 175 | 17967 | 769.67 | 559 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF094QKU.bed.gz | 1.13 MB | f2f5ee1f0efd4f8fc3bcabf03dc4a2b8 |
| ENCFF094QKU.tabix.bed.gz | 521.16 KB | 38a002c797da8a8920e826ed39b8bddc |
| ENCFF094QKU.tabix.bed.gz.tbi | 224.88 KB | df394f47f443a38b8544b8d5f8c1235c |
| genomic_resource.yaml | 2.77 KB | 1ba1b37ac6a7cf17767dee22e2455f37 |
| statistics/ |