Histone_ChIP-seq_ENCSR445RFF
Histone_ChIP-seq ENCSR445RFF [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR445RFF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR445RFF [biosamplesummary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN953YRK|/analyses/ENCAN953YRK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN953YRK|/analyses/ENCAN953YRK/} has in progress subobject document {ddbd7400-97c3-47a1-b078-ec5efe87a366|/documents/ddbd7400-97c3-47a1-b078-ec5efe87a366/} audit_not_compliant: Processed alignments file {ENCFF764EJI|/files/ENCFF764EJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19007370 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF764EJI|/files/ENCFF764EJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF764EJI|/files/ENCFF764EJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR445RFF | float |
Histone_ChIP-seq_ENCSR445RFF |
Histone_ChIP-seq ENCSR445RFF [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K36me3"]
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[1.81, 36.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF406TXJ.bed.gz | 1.94 MB | 3e76fc0358defb36c562ed6a83369f32 |
| ENCFF406TXJ.bed.gz.dvc | 101.0 B | b7e2f85e621b9632bfe72b1780dbd392 |
| ENCFF406TXJ.tabix.bed.gz | 972.44 KB | 442217da79c21ef319dd17d039c91672 |
| ENCFF406TXJ.tabix.bed.gz.dvc | 106.0 B | 8294629a00ecb14acbb9b13e86854f48 |
| ENCFF406TXJ.tabix.bed.gz.tbi | 174.07 KB | 81782310d5cc896bd9c2d5a92909e31a |
| ENCFF406TXJ.tabix.bed.gz.tbi.dvc | 110.0 B | 6121144042d357a39bb07f52ba25ba46 |
| genomic_resource.yaml | 3.48 KB | 01b9cf19e4ba1913ced9c51a149805a1 |
| genomic_resource_original.yaml | 3.34 KB | d5ec4de61c1ede2665a8665ada6ff05c |
| statistics/ |