Resource

Id Histone_ChIP-seq/ENCSR444TQQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR444TQQ [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR444TQQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:15.794736+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR444TQQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR444TQQ float

Histone_ChIP-seq_ENCSR444TQQ
Histone_ChIP-seq ENCSR444TQQ [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR444TQQ [1.9, 12.5]
n
20,612,655
mean
4.56
sd
1.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 206126550.64% 40736
chr1 2047615 0.82% 4168
chr2 1373689 0.57% 2608
chr3 975163 0.49% 2106
chr4 753737 0.40% 1204
chr5 1157755 0.64% 2097
chr6 1233564 0.72% 2172
chr7 1005788 0.63% 1684
chr8 655862 0.45% 1239
chr9 957179 0.69% 1921
chr10 1228834 0.92% 2317
chr11 1289528 0.95% 2796
chr12 959156 0.72% 1787
chr13 373731 0.33% 683
chr14 672181 0.63% 1364
chr15 722439 0.71% 1488
chr16 795962 0.88% 1668
chr17 1330908 1.60% 2565
chr18 327556 0.41% 665
chr19 657835 1.12% 1311
chr20 1065751 1.65% 2274
chr21 195936 0.42% 434
chr22 472020 0.93% 1111
chrX 360466 0.23% 1074
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40736 180 19035 506.01 328
global segment-length histogram

Files

Filename Size md5
ENCFF440BWD.bed.gz 669.74 KB d909862e7925163f12f6a49579f1478f
ENCFF440BWD.tabix.bed.gz 369.49 KB 598386fbf42a992e0d8416f588f0fa09
ENCFF440BWD.tabix.bed.gz.tbi 119.79 KB adce1ea9759bcf054e3e4aaffe70dec7
genomic_resource.yaml 2.1 KB 7f6f2cdda5144a9864590c4504626c4c
statistics/