Resource

Id Histone_ChIP-seq/ENCSR443JIOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR443JIO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (86 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR443JIO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (86 years)
  • date_created: 2021-08-25T18:07:28.950186+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR443JIO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (86 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR443JIO float

Histone_ChIP-seq_ENCSR443JIO
Histone_ChIP-seq ENCSR443JIO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (86 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR443JIO [1.81, 60.5]
n
53,830,546
mean
24.9
sd
13.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 538305461.67% 29062
chr1 5245398 2.11% 2774
chr2 3738016 1.54% 2032
chr3 3216166 1.62% 1696
chr4 2231344 1.17% 1194
chr5 2738129 1.51% 1441
chr6 3161474 1.85% 1728
chr7 2603221 1.63% 1504
chr8 2110518 1.45% 1121
chr9 2188577 1.58% 1223
chr10 2328349 1.74% 1259
chr11 2895892 2.14% 1486
chr12 2878196 2.16% 1465
chr13 1229595 1.08% 680
chr14 1721570 1.61% 905
chr15 1699972 1.67% 930
chr16 2052182 2.27% 1124
chr17 2923841 3.51% 1524
chr18 1018778 1.27% 577
chr19 3199067 5.46% 1817
chr20 1374825 2.13% 758
chr21 535039 1.15% 317
chr22 1190191 2.34% 644
chrX 1550206 0.99% 863
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29062 230 25242 1852.27 1513
global segment-length histogram

Files

Filename Size md5
ENCFF855GAM.bed.gz 716.99 KB 8d53618e61c5d71baae2a1858d0a75cb
ENCFF855GAM.tabix.bed.gz 325.69 KB 9815fa88c8b38bc5cceee159e667ac98
ENCFF855GAM.tabix.bed.gz.tbi 178.85 KB 50950f0c16ef91ea82d4730bfba6b1c3
genomic_resource.yaml 1.7 KB 6b5ff8d2b67cd22af1707ad26ffc7580
statistics/