Histone_ChIP-seq_ENCSR442ZOI
Histone_ChIP-seq ENCSR442ZOI [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR442ZOI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR442ZOI [biosamplesummary="Homo sapiens hepatocyte originated from H9" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN858FLA|/analyses/ENCAN858FLA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF434GEP|/files/ENCFF434GEP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF434GEP|/files/ENCFF434GEP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR442ZOI | float |
Histone_ChIP-seq_ENCSR442ZOI |
Histone_ChIP-seq ENCSR442ZOI [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K4me3"]
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[1.34, 13.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF969SEE.bed.gz | 748.66 KB | 3e665af7d2b06ee2ac24b9f0e78c3151 |
| ENCFF969SEE.bed.gz.dvc | 100.0 B | 0d843d21a90134184bde21220a89b239 |
| ENCFF969SEE.tabix.bed.gz | 316.47 KB | 2879bf3296427742abd267290af99799 |
| ENCFF969SEE.tabix.bed.gz.dvc | 106.0 B | 70c502672b0e28145ec6c5cee7ef896d |
| ENCFF969SEE.tabix.bed.gz.tbi | 146.17 KB | a98b73436a158c98efdccd8f68b9845f |
| ENCFF969SEE.tabix.bed.gz.tbi.dvc | 110.0 B | 271b6e4d0b24bcd45fd325c6c888f7d9 |
| genomic_resource.yaml | 2.73 KB | 46eff377bcac587ef6e7d3257351bbd4 |
| genomic_resource_original.yaml | 2.61 KB | 7dd41641f7ef1349b84dec2d205c87ae |
| statistics/ |