Resource
| Id | Histone_ChIP-seq/ENCSR441UHO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR441UHO [biosample_summary="Homo sapiens H1" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN558DBR|/analyses/ENCAN558DBR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF256VHY|/files/ENCFF256VHY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10305415 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF376SHV|/files/ENCFF376SHV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12167413 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR441UHO | float |
Histone_ChIP-seq_ENCSR441UHO |
Histone_ChIP-seq ENCSR441UHO [biosample_summary="Homo sapiens H1" and target="H3K9ac"]
|
![]() |
[1.81, 64] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15004161 | 0.47% | 37110 |
| chr1 | 1528738 | 0.61% | 3704 |
| chr1_KI270713v1_random | 508 | 1.25% | 3 |
| chr1_KI270714v1_random | 130 | 0.31% | 1 |
| chr2 | 1027508 | 0.42% | 2497 |
| chr3 | 891303 | 0.45% | 2146 |
| chr4 | 601694 | 0.32% | 1468 |
| chr4_GL000008v2_random | 622 | 0.30% | 2 |
| chr5 | 737973 | 0.41% | 1774 |
| chr6 | 982684 | 0.58% | 2300 |
| chr7 | 684359 | 0.43% | 1745 |
| chr8 | 527730 | 0.36% | 1356 |
| chr9 | 561218 | 0.41% | 1448 |
| chr9_KI270718v1_random | 170 | 0.45% | 1 |
| chr10 | 584425 | 0.44% | 1492 |
| chr11 | 809253 | 0.60% | 1946 |
| chr12 | 827205 | 0.62% | 2000 |
| chr13 | 309385 | 0.27% | 805 |
| chr14 | 532024 | 0.50% | 1283 |
| chr15 | 469487 | 0.46% | 1186 |
| chr16 | 583886 | 0.65% | 1522 |
| chr17 | 824709 | 0.99% | 2004 |
| chr17_KI270729v1_random | 244 | 0.09% | 1 |
| chr18 | 238401 | 0.30% | 648 |
| chr19 | 1000414 | 1.71% | 2470 |
| chr20 | 390177 | 0.61% | 1009 |
| chr21 | 122864 | 0.26% | 333 |
| chr22 | 312312 | 0.61% | 842 |
| chr22_KI270733v1_random | 1697 | 0.94% | 6 |
| chr22_KI270736v1_random | 359 | 0.20% | 1 |
| chrUn_KI270438v1 | 215 | 0.19% | 1 |
| chrX | 431942 | 0.28% | 1081 |
| chrY | 20525 | 0.04% | 35 |
| 3334 contigs with no values (127991824 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 37110 | 125 | 5345 | 404.32 | 279 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF806NNI.bed.gz | 820.99 KB | bf298c4a9119d9b1537adba17f68f092 |
| ENCFF806NNI.tabix.bed.gz | 385.0 KB | 7045365004246a5dcf3a2b8e81edd92b |
| ENCFF806NNI.tabix.bed.gz.tbi | 159.22 KB | 4720dfcd94cbfecde3b254ffa0d90778 |
| genomic_resource.yaml | 2.34 KB | b6c0fd219a6480c27e58e5a565b5672e |
| statistics/ |
