Resource

Id Histone_ChIP-seq/ENCSR441SATcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR441SAT [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR441SAT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-10-01T07:17:16.163601+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR441SAT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR441SAT float

Histone_ChIP-seq_ENCSR441SAT
Histone_ChIP-seq ENCSR441SAT [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR441SAT [1.48, 18.9]
n
19,420,963
mean
7.4
sd
3.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194209630.60% 35267
chr1 1827926 0.73% 3219
chr2 1260833 0.52% 2177
chr3 1078211 0.54% 1767
chr4 807439 0.42% 1321
chr4_GL000008v2_random 3561 1.70% 6
chr5 924441 0.51% 1611
chr5_GL000208v1_random 184 0.20% 1
chr6 1186299 0.69% 2031
chr7 907087 0.57% 1684
chr8 771972 0.53% 1433
chr9 761449 0.55% 1376
chr9_KI270720v1_random 384 0.98% 1
chr10 789138 0.59% 1443
chr11 993438 0.74% 1794
chr12 1000184 0.75% 1713
chr13 399554 0.35% 737
chr14 684017 0.64% 1232
chr14_GL000225v1_random 18840 8.92% 70
chr14_KI270722v1_random 3844 1.98% 14
chr15 595568 0.58% 1000
chr16 772002 0.85% 1430
chr17 1045338 1.26% 1869
chr17_GL000205v2_random 23029 12.41% 68
chr17_KI270729v1_random 2545 0.91% 10
chr17_KI270730v1_random 1478 1.31% 6
chr18 349150 0.43% 588
chr19 1475811 2.52% 3264
chr20 506450 0.79% 962
chr21 208667 0.45% 444
chr22 389370 0.77% 759
chr22_KI270735v1_random 243 0.57% 1
chr22_KI270736v1_random 9289 5.11% 14
chrUn_GL000216v2 9662 5.47% 36
chrUn_GL000219v1 4920 2.75% 15
chrUn_GL000224v1 1302 0.72% 7
chrUn_KI270438v1 2482 2.21% 10
chrUn_KI270442v1 16903 4.31% 51
chrUn_KI270448v1 290 3.63% 2
chrUn_KI270512v1 340 1.50% 1
chrUn_KI270517v1 150 4.61% 1
chrUn_KI270519v1 768 0.56% 2
chrUn_KI270589v1 1245 2.80% 5
chrUn_KI270591v1 492 8.49% 1
chrUn_KI270744v1 814 0.48% 4
chrUn_KI270746v1 139 0.21% 1
chrUn_KI270751v1 805 0.53% 2
chrUn_KI270757v1 626 0.88% 2
chrX 549242 0.35% 1023
chrY 33042 0.06% 59
3317 contigs with no values (125807356 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35267 130 6684 550.68 392
global segment-length histogram

Files

Filename Size md5
ENCFF052VWO.bed.gz 784.45 KB a3ee5f9e79703b7d2f8b379f0aea9caf
ENCFF052VWO.tabix.bed.gz 377.93 KB dd059af5084106938a012d191eb2a571
ENCFF052VWO.tabix.bed.gz.tbi 152.97 KB 1a009a7250ad59bd2812b3ca44aed06c
genomic_resource.yaml 1.47 KB 384e84a0d0f0d92fd6c63854b12379b8
statistics/