Resource

Id Histone_ChIP-seq/ENCSR441RDQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR441RDQ [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell originated from blood cell" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR441RDQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000792/
  • biosample_summary: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell originated from blood cell
  • date_created: 2015-09-15T19:48:50.547479+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR441RDQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR441RDQ float

Histone_ChIP-seq_ENCSR441RDQ
Histone_ChIP-seq ENCSR441RDQ [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell originated from blood cell" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR441RDQ [1.76, 21.8]
n
25,367,691
mean
5.81
sd
2.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 253676910.79% 63121
chr1 1596955 0.64% 3820
chr2 1656573 0.68% 4396
chr3 1409216 0.71% 3839
chr4 1423047 0.75% 4107
chr5 1522849 0.84% 4124
chr6 1070208 0.63% 2878
chr7 1407313 0.88% 3630
chr8 1150981 0.79% 3238
chr9 865385 0.63% 2144
chr10 1031919 0.77% 2496
chr11 963205 0.71% 2801
chr12 1119288 0.84% 2660
chr13 807281 0.71% 2510
chr14 819336 0.77% 2251
chr15 675415 0.66% 1548
chr16 921894 1.02% 2223
chr17 509873 0.61% 1083
chr18 557554 0.69% 1603
chr19 4021853 6.86% 6465
chr20 387639 0.60% 995
chr21 482476 1.03% 1346
chr22 236417 0.47% 549
chrX 622545 0.40% 2106
chrY 108469 0.19% 309
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63121 130 10556 401.89 289
global segment-length histogram

Files

Filename Size md5
ENCFF834IFU.bed.gz 1.14 MB 670b6315eb711fb4a9f493cfb8a977ba
ENCFF834IFU.tabix.bed.gz 592.27 KB 38ab0caa3c7dcc77dbf556f0d499923f
ENCFF834IFU.tabix.bed.gz.tbi 259.11 KB 0817815aac43392ab2e8371afac8a547
genomic_resource.yaml 1.61 KB 87c12bbcd1f98920f35b43188030a07b
statistics/